Click here to switch to the map view.

The map label for this gene is 55980540

Identifier: 55980540

GI number: 55980540

Start: 539138

End: 539548

Strand: Reverse

Name: 55980540

Synonym: TTHA0571

Alternate gene names: NA

Gene position: 539548-539138 (Counterclockwise)

Preceding gene: 55980545

Following gene: 55980536

Centisome position: 29.17

GC content: 70.07

Gene sequence:

>411_bases
ATGCTGGAGCGCCACGACCGCCTGGAAACCCTGAGAAAGCTGAAGGAACTGCAGGAGCGCATCGCCGAGCTCGCCTACCT
CCTCACCGGGGAGGAGCCCGCCGCCTGGACCCCCAGGGTGGACCTTCTGGAAACCGAGGAGCACTACGTCCTCCTCGTGG
ACCTTCCCGGGGTGCGCCCCGAGGACCTGGAGCTTCTGGAGGAGGGGCAGCGGGTGACCCTGGCCGGGGTGCGCCACCCC
CTGCCCGGCACCTACCTCTTGGAGGAGAGGCCCATGGGCACCTTCCGCCGCACCCTGGACCTCCCCGGGCCCATTGAGGA
GGGGACGGCCCAGGCCACCCTGCGGAACGGGGTCTTGGAGGTCCGCTTCCGCAAGAGGCCGGCCACGGCCCTTCCCCTAA
AGGAGGCGTAG

Upstream 100 bases:

>100_bases
CGGGGACCTCCTCCCCCAGGCGGAGGGCCAAAAAGGTCTTGCCGCTTCCCGTGGGGCCCGCGAGGACGGGGATCGCCTCC
ACGTCCCTTATGCTAAGGGC

Downstream 100 bases:

>100_bases
CACCCGGTCGTCCCCGGGGCGCACCTGGCCCCTCCCGTCCCGGTTGGAGGTGGTGACGTAAAGGGCCCCATCGGGGCCCA
CCTGCACCTCCCTAAGGCGG

Product: small heat shock protein

Products: NA

Alternate protein names: Heat Shock Protein-Related Protein; Small Heat Shock Protein

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MLERHDRLETLRKLKELQERIAELAYLLTGEEPAAWTPRVDLLETEEHYVLLVDLPGVRPEDLELLEEGQRVTLAGVRHP
LPGTYLLEERPMGTFRRTLDLPGPIEEGTAQATLRNGVLEVRFRKRPATALPLKEA

Sequences:

>Translated_136_residues
MLERHDRLETLRKLKELQERIAELAYLLTGEEPAAWTPRVDLLETEEHYVLLVDLPGVRPEDLELLEEGQRVTLAGVRHP
LPGTYLLEERPMGTFRRTLDLPGPIEEGTAQATLRNGVLEVRFRKRPATALPLKEA
>Mature_136_residues
MLERHDRLETLRKLKELQERIAELAYLLTGEEPAAWTPRVDLLETEEHYVLLVDLPGVRPEDLELLEEGQRVTLAGVRHP
LPGTYLLEERPMGTFRRTLDLPGPIEEGTAQATLRNGVLEVRFRKRPATALPLKEA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15540; Mature: 15540

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERHDRLETLRKLKELQERIAELAYLLTGEEPAAWTPRVDLLETEEHYVLLVDLPGVRP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCCC
EDLELLEEGQRVTLAGVRHPLPGTYLLEERPMGTFRRTLDLPGPIEEGTAQATLRNGVLE
HHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHCCEEE
VRFRKRPATALPLKEA
EEECCCCCCCCCCCCC
>Mature Secondary Structure
MLERHDRLETLRKLKELQERIAELAYLLTGEEPAAWTPRVDLLETEEHYVLLVDLPGVRP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCCC
EDLELLEEGQRVTLAGVRHPLPGTYLLEERPMGTFRRTLDLPGPIEEGTAQATLRNGVLE
HHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHCCEEE
VRFRKRPATALPLKEA
EEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA