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The map label for this gene is ymdB [C]

Identifier: 55980101

GI number: 55980101

Start: 129522

End: 130001

Strand: Reverse

Name: ymdB [C]

Synonym: TTHA0132

Alternate gene names: 55980101

Gene position: 130001-129522 (Counterclockwise)

Preceding gene: 55980105

Following gene: 55980099

Centisome position: 7.03

GC content: 70.0

Gene sequence:

>480_bases
ATGGCGCGCATCCGGGTGGTCCAAGGGGACATCACCGAGTTCCAAGGGGACGCCATCGTCAACGCCGCCAACAACTACCT
GAAGCTCGGGGCCGGGGTGGCGGGGGCGATCCTGAGGAAGGGCGGCCCCTCCATCCAGGAGGAGTGCGACCGCATCGGCA
AGATCCGGGTGGGGGAGGCGGCGGTCACGGGGGCGGGGAACCTCCCGGTGCGCTACGTGATCCACGCCGCCGTCCTCGGG
GACGAGCCCGCGAGCCTGGAGACGGTGCGCAAGGCCACGAAAAGCGCCCTGGAGAAGGCGGTGGAGCTCGGCTTGAAGAC
CGTGGCCTTTCCCCTTTTGGGCACGGGGGTGGGGGGGCTTCCCGTGGAGGCCGTGGCCCGGGTGATGCTGGAGGAGATCA
AGAAGGCCCCGGACACCCTGGAGGTCACCCTCTACGGCTACCGCGAGGAGGACGCCGAGGCCATCCGCCGGGCCCTTTAG

Upstream 100 bases:

>100_bases
CGCCCGAACCCCCGGCCCGCGCCCGTGACCATGACGATCTTCCCCTCGAGGCCCAGAAGGTCCCGTGACATCACGGCCCA
TTGTAAGGGAGAATAAAGCC

Downstream 100 bases:

>100_bases
GGGGCTTGTTCTTCCCCGGACGCTTGGCCTTCGCCTCCGCCCGGGACCTCGGGGGAGGGGGTTTCGGGCTTGGGGAAGTA
GCCCTGGGCCAGGAGCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLG
DEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL

Sequences:

>Translated_159_residues
MARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLG
DEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL
>Mature_158_residues
ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGD
EPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=160, Percent_Identity=37.5, Blast_Score=101, Evalue=3e-22,
Organism=Homo sapiens, GI117968621, Length=140, Percent_Identity=36.4285714285714, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI226371718, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371716, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371714, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371712, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371710, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226371706, Length=145, Percent_Identity=35.1724137931034, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI154813199, Length=171, Percent_Identity=32.1637426900585, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI20336746, Length=137, Percent_Identity=32.1167883211679, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1787283, Length=168, Percent_Identity=36.3095238095238, Blast_Score=85, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538214, Length=169, Percent_Identity=34.9112426035503, Blast_Score=86, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 16750; Mature: 16618

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEA
CCEEEEEECCCHHHCCCCCEECCCCHHHHCCCHHHHHHHCCCCCHHHHHHHHCCEEECCE
AVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGL
EECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL
CHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCC
>Mature Secondary Structure 
ARIRVVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEA
CEEEEEECCCHHHCCCCCEECCCCHHHHCCCHHHHHHHCCCCCHHHHHHHHCCEEECCE
AVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGL
EECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRRAL
CHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]