| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is cshA [H]
Identifier: 55980078
GI number: 55980078
Start: 108345
End: 109898
Strand: Reverse
Name: cshA [H]
Synonym: TTHA0109
Alternate gene names: 55980078
Gene position: 109898-108345 (Counterclockwise)
Preceding gene: 55980079
Following gene: 55980077
Centisome position: 5.94
GC content: 72.33
Gene sequence:
>1554_bases GTGGGCCCGGAAAGGCAGAGCATGGAGTTTAAAGACTTTCCCCTGAAGCCAGAAATCCTGGAAGCCCTCCACGGGCGCGG CCTCACCACCCCCACCCCCATCCAGGCGGCGGCGCTCCCCTTGGCCCTGGAGGGCAAGGACCTCATCGGCCAGGCCCGCA CCGGCACCGGCAAGACCCTGGCCTTCGCCCTCCCCATCGCCGAAAGGCTTGCGCCAAGCCAGGAGAGGGGGCGGAAGCCC CGGGCCCTCGTCCTCACCCCCACGCGGGAGCTCGCCCTCCAGGTGGCCTCCGAGCTCACCGCCGTGGCCCCCCACCTGAA GGTGGTGGCCGTCTACGGGGGCACCGGGTACGGCAAGCAGAAGGAGGCCCTCCTCCGGGGGGCGGACGCGGTGGTGGCCA CCCCGGGGCGGGCCCTGGACTACCTGCGGCAGGGGGTCTTGGACCTCTCCCGGGTGGAGGTCGCCGTCTTGGACGAGGCG GACGAGATGCTCTCCATGGGCTTTGAGGAGGAGGTGGAGGCCCTCCTTTCCGCCACGCCCCCTTCCCGCCAGACCCTCCT CTTCTCCGCTACCCTCCCCTCCTGGGCCAAGAGGCTCGCCGAGCGCTACATGAAAAACCCCGTCCTCATCAACGTCATCA AGGACGAGCCCGTCACCTACGAGGAGGAAGCGGTCCCGGCCCCGGTGCGGGGGCGGCTTGAGGTCCTCTCCGACCTTCTT TACGTGGCCTCCCCCGATCGGGCCATGGTCTTCACCCGGACCAAGGCGGAGACGGAGGAGATCGCCCAAGGCCTTTTGCG CTTGGGCCACCTGGCCCAGGCCCTCCACGGGGACCTCTCCCAGGGCGAGCGGGAACGGGTCCTGGGGGCCTTCCGCCAAG GGGAGGTGCGGGTCCTGGTGGCCACGGACGTGGCCGCCCGCGGCCTGGACATCCCCCAGGTGGACCTGGTGGTGCACTAC CGCCTGCCCGACCGGGCGGAGGCCTACCAGCACCGCTCGGGCCGCACGGGCCGGGCGGGCCGGGGAGGGCGGGTCGTCCT CCTCTACGGGCCCAGGGAGCGCCGGGACGTGGAGGCCTTGGAGCGGGCGGTGGGGCGCCGCTTCAAGCGGGTGAACCCCC CTACCCCGGAGGAGGTCCTCGAGGCCAAGTGGCGCCACCTTTTGGCCCGCCTCGCCCGGGTGCCGGAGAAGGACTACCGG CTCCACCTGGACTTTGCGGGCCGCCTCTTCAGCGAGGGGCGGGTGGAGGTGGTGGCCGCCCTCCTCGCCCTCCTCCTGGG CGGGGCGCCCAAGGAGAAGAGCCTCCTCACCGGGGAGGAGGGGTGGCGCACCTACAAGGCCACGGGGCCGAGGCTCTCCC TGCCCCGGCTCGTGGCCCTCTTGAAGGGGCAGGGCCTCGAGGTGGGCAAGATCGCTGAGGCCGAAGGGGGCCTGTACGTG GACCTCCGCCCCGAGGCCCGGCCGGAGGTGGCCGGCCTCCGGCTGGAGCCCGCCAGGAGGGTGGAGGGCCTCTTGGAGAT CCCTTCCCGCACGAGGCGCCCGGCCAGGGCGTAG
Upstream 100 bases:
>100_bases CCCGGGAGGGGGAGGAGGTGGAGGTCATCCCCTTGACTTTCGTGCCCTAGTTCACTAAGCTAGTAAGGTTTACGGGCGCT ACCCCCCTTTTCGGGCGCAG
Downstream 100 bases:
>100_bases GTACCCCTTTCCCGTGGGTTCTTCGCCCGGGCCAGGGCGAAGAAAAGCCCCGCCTCCCGAAGGGGCGGGGCCTTGGTGCG CCCGGAGGGATTCGAACCCC
Product: ATP-dependent RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MGPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP RALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA DEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL YVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY RLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYR LHLDFAGRLFSEGRVEVVAALLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYV DLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA
Sequences:
>Translated_517_residues MGPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP RALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA DEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL YVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY RLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYR LHLDFAGRLFSEGRVEVVAALLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYV DLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA >Mature_516_residues GPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPR ALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLLY VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRL HLDFAGRLFSEGRVEVVAALLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYVD LRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA
Specific function: May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. Unwinds dsRNA in both 5'- and 3'-directions and shows RNA-dependent ATPase activity [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm, nucleoid [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI13129006, Length=458, Percent_Identity=42.1397379912664, Blast_Score=325, Evalue=5e-89, Organism=Homo sapiens, GI50659095, Length=458, Percent_Identity=40.8296943231441, Blast_Score=318, Evalue=1e-86, Organism=Homo sapiens, GI222352149, Length=390, Percent_Identity=39.2307692307692, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI4758138, Length=382, Percent_Identity=36.6492146596859, Blast_Score=242, Evalue=7e-64, Organism=Homo sapiens, GI148613856, Length=377, Percent_Identity=36.0742705570292, Blast_Score=241, Evalue=1e-63, Organism=Homo sapiens, GI38201710, Length=377, Percent_Identity=36.0742705570292, Blast_Score=241, Evalue=1e-63, Organism=Homo sapiens, GI45446747, Length=361, Percent_Identity=38.781163434903, Blast_Score=239, Evalue=4e-63, Organism=Homo sapiens, GI45446743, Length=361, Percent_Identity=38.781163434903, Blast_Score=239, Evalue=4e-63, Organism=Homo sapiens, GI224593278, Length=366, Percent_Identity=40.7103825136612, Blast_Score=239, Evalue=4e-63, Organism=Homo sapiens, GI41327773, Length=336, Percent_Identity=40.4761904761905, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI164664518, Length=377, Percent_Identity=34.2175066312997, Blast_Score=233, Evalue=2e-61, Organism=Homo sapiens, GI20149629, Length=382, Percent_Identity=36.9109947643979, Blast_Score=233, Evalue=4e-61, Organism=Homo sapiens, GI7661920, Length=340, Percent_Identity=36.7647058823529, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI55749865, Length=383, Percent_Identity=33.9425587467363, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI21071032, Length=351, Percent_Identity=37.3219373219373, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI262118318, Length=361, Percent_Identity=35.7340720221607, Blast_Score=212, Evalue=7e-55, Organism=Homo sapiens, GI188035877, Length=393, Percent_Identity=33.8422391857506, Blast_Score=212, Evalue=8e-55, Organism=Homo sapiens, GI216548263, Length=361, Percent_Identity=35.7340720221607, Blast_Score=211, Evalue=9e-55, Organism=Homo sapiens, GI262231852, Length=361, Percent_Identity=35.7340720221607, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI13518015, Length=361, Percent_Identity=35.7340720221607, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI41327771, Length=376, Percent_Identity=36.1702127659575, Blast_Score=208, Evalue=8e-54, Organism=Homo sapiens, GI301171475, Length=368, Percent_Identity=36.6847826086957, Blast_Score=207, Evalue=3e-53, Organism=Homo sapiens, GI87196351, Length=368, Percent_Identity=36.6847826086957, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI301171467, Length=368, Percent_Identity=36.6847826086957, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI169881239, Length=369, Percent_Identity=35.7723577235772, Blast_Score=201, Evalue=1e-51, Organism=Homo sapiens, GI13514809, Length=369, Percent_Identity=35.7723577235772, Blast_Score=201, Evalue=1e-51, Organism=Homo sapiens, GI41327779, Length=370, Percent_Identity=35.4054054054054, Blast_Score=199, Evalue=5e-51, Organism=Homo sapiens, GI41327776, Length=368, Percent_Identity=34.5108695652174, Blast_Score=198, Evalue=8e-51, Organism=Homo sapiens, GI31542656, Length=377, Percent_Identity=35.2785145888594, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI13514831, Length=414, Percent_Identity=33.3333333333333, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI164419743, Length=357, Percent_Identity=36.1344537815126, Blast_Score=195, Evalue=8e-50, Organism=Homo sapiens, GI51094101, Length=357, Percent_Identity=36.1344537815126, Blast_Score=195, Evalue=9e-50, Organism=Homo sapiens, GI83700235, Length=330, Percent_Identity=34.8484848484849, Blast_Score=195, Evalue=9e-50, Organism=Homo sapiens, GI4503529, Length=334, Percent_Identity=32.9341317365269, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI21040371, Length=378, Percent_Identity=31.2169312169312, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI4758112, Length=378, Percent_Identity=30.952380952381, Blast_Score=186, Evalue=6e-47, Organism=Homo sapiens, GI18375623, Length=378, Percent_Identity=30.952380952381, Blast_Score=186, Evalue=6e-47, Organism=Homo sapiens, GI38327634, Length=401, Percent_Identity=33.6658354114713, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI8922886, Length=391, Percent_Identity=31.4578005115089, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI6005743, Length=391, Percent_Identity=30.9462915601023, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI17505907, Length=418, Percent_Identity=31.5789473684211, Blast_Score=172, Evalue=7e-43, Organism=Homo sapiens, GI38569503, Length=384, Percent_Identity=29.1666666666667, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI38569505, Length=384, Percent_Identity=29.1666666666667, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI256223453, Length=357, Percent_Identity=30.812324929972, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI62241022, Length=374, Percent_Identity=31.0160427807487, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI9506931, Length=412, Percent_Identity=30.5825242718447, Blast_Score=166, Evalue=4e-41, Organism=Homo sapiens, GI164419732, Length=374, Percent_Identity=29.6791443850267, Blast_Score=165, Evalue=9e-41, Organism=Homo sapiens, GI62241024, Length=353, Percent_Identity=30.3116147308782, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI9966805, Length=380, Percent_Identity=32.6315789473684, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI154759257, Length=442, Percent_Identity=29.6380090497738, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI4826686, Length=332, Percent_Identity=31.0240963855422, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI20336298, Length=251, Percent_Identity=31.8725099601594, Blast_Score=120, Evalue=5e-27, Organism=Homo sapiens, GI256773275, Length=410, Percent_Identity=27.8048780487805, Blast_Score=117, Evalue=3e-26, Organism=Escherichia coli, GI87082221, Length=374, Percent_Identity=44.6524064171123, Blast_Score=294, Evalue=1e-80, Organism=Escherichia coli, GI1787016, Length=376, Percent_Identity=41.7553191489362, Blast_Score=266, Evalue=3e-72, Organism=Escherichia coli, GI1790214, Length=377, Percent_Identity=41.3793103448276, Blast_Score=262, Evalue=4e-71, Organism=Escherichia coli, GI1787605, Length=369, Percent_Identity=39.0243902439024, Blast_Score=251, Evalue=6e-68, Organism=Escherichia coli, GI1788930, Length=338, Percent_Identity=41.1242603550296, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI48994977, Length=103, Percent_Identity=31.0679611650485, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533224, Length=363, Percent_Identity=38.8429752066116, Blast_Score=247, Evalue=1e-65, Organism=Caenorhabditis elegans, GI71987143, Length=357, Percent_Identity=36.6946778711485, Blast_Score=243, Evalue=2e-64, Organism=Caenorhabditis elegans, GI86570094, Length=337, Percent_Identity=40.6528189910979, Blast_Score=225, Evalue=4e-59, Organism=Caenorhabditis elegans, GI17537549, Length=365, Percent_Identity=37.2602739726027, Blast_Score=225, Evalue=4e-59, Organism=Caenorhabditis elegans, GI71995724, Length=340, Percent_Identity=36.7647058823529, Blast_Score=224, Evalue=7e-59, Organism=Caenorhabditis elegans, GI17552114, Length=379, Percent_Identity=31.6622691292876, Blast_Score=224, Evalue=8e-59, Organism=Caenorhabditis elegans, GI17507121, Length=340, Percent_Identity=36.7647058823529, Blast_Score=224, Evalue=1e-58, Organism=Caenorhabditis elegans, GI17510307, Length=403, Percent_Identity=35.9801488833747, Blast_Score=221, Evalue=8e-58, Organism=Caenorhabditis elegans, GI71995514, Length=403, Percent_Identity=35.9801488833747, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17510309, Length=403, Percent_Identity=35.9801488833747, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17555296, Length=361, Percent_Identity=37.6731301939058, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17510559, Length=383, Percent_Identity=36.8146214099217, Blast_Score=219, Evalue=4e-57, Organism=Caenorhabditis elegans, GI32565321, Length=374, Percent_Identity=35.5614973262032, Blast_Score=208, Evalue=5e-54, Organism=Caenorhabditis elegans, GI17552642, Length=400, Percent_Identity=33.25, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17507945, Length=353, Percent_Identity=35.9773371104816, Blast_Score=204, Evalue=8e-53, Organism=Caenorhabditis elegans, GI115532548, Length=389, Percent_Identity=34.4473007712082, Blast_Score=203, Evalue=1e-52, Organism=Caenorhabditis elegans, GI115532546, Length=373, Percent_Identity=34.8525469168901, Blast_Score=203, Evalue=2e-52, Organism=Caenorhabditis elegans, GI71995718, Length=371, Percent_Identity=36.6576819407008, Blast_Score=202, Evalue=5e-52, Organism=Caenorhabditis elegans, GI71999646, Length=346, Percent_Identity=35.2601156069364, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI71999644, Length=346, Percent_Identity=35.2601156069364, Blast_Score=198, Evalue=5e-51, Organism=Caenorhabditis elegans, GI17509811, Length=365, Percent_Identity=33.1506849315069, Blast_Score=197, Evalue=1e-50, Organism=Caenorhabditis elegans, GI71982858, Length=378, Percent_Identity=31.2169312169312, Blast_Score=191, Evalue=1e-48, Organism=Caenorhabditis elegans, GI17507877, Length=355, Percent_Identity=36.6197183098592, Blast_Score=189, Evalue=3e-48, Organism=Caenorhabditis elegans, GI17507881, Length=363, Percent_Identity=35.2617079889807, Blast_Score=187, Evalue=8e-48, Organism=Caenorhabditis elegans, GI17505370, Length=352, Percent_Identity=36.6477272727273, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17507879, Length=355, Percent_Identity=35.4929577464789, Blast_Score=182, Evalue=5e-46, Organism=Caenorhabditis elegans, GI193206561, Length=347, Percent_Identity=30.5475504322767, Blast_Score=168, Evalue=8e-42, Organism=Caenorhabditis elegans, GI17536099, Length=406, Percent_Identity=31.0344827586207, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI17553716, Length=370, Percent_Identity=28.3783783783784, Blast_Score=167, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17536101, Length=400, Percent_Identity=30.75, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17507641, Length=407, Percent_Identity=32.4324324324324, Blast_Score=164, Evalue=9e-41, Organism=Caenorhabditis elegans, GI17536103, Length=407, Percent_Identity=30.958230958231, Blast_Score=162, Evalue=5e-40, Organism=Caenorhabditis elegans, GI193208216, Length=378, Percent_Identity=30.6878306878307, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI32564046, Length=388, Percent_Identity=31.9587628865979, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17508543, Length=428, Percent_Identity=27.3364485981308, Blast_Score=148, Evalue=7e-36, Organism=Caenorhabditis elegans, GI71990816, Length=387, Percent_Identity=31.266149870801, Blast_Score=141, Evalue=9e-34, Organism=Caenorhabditis elegans, GI17556951, Length=374, Percent_Identity=27.807486631016, Blast_Score=138, Evalue=6e-33, Organism=Caenorhabditis elegans, GI25148203, Length=441, Percent_Identity=25.6235827664399, Blast_Score=138, Evalue=8e-33, Organism=Caenorhabditis elegans, GI71982862, Length=207, Percent_Identity=34.7826086956522, Blast_Score=129, Evalue=5e-30, Organism=Caenorhabditis elegans, GI25148291, Length=334, Percent_Identity=27.5449101796407, Blast_Score=124, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71997889, Length=394, Percent_Identity=28.4263959390863, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25148205, Length=352, Percent_Identity=24.1477272727273, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71987152, Length=87, Percent_Identity=44.8275862068966, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25145561, Length=365, Percent_Identity=24.3835616438356, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6321360, Length=364, Percent_Identity=39.5604395604396, Blast_Score=241, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6320041, Length=365, Percent_Identity=35.0684931506849, Blast_Score=234, Evalue=2e-62, Organism=Saccharomyces cerevisiae, GI6324217, Length=347, Percent_Identity=38.9048991354467, Blast_Score=233, Evalue=4e-62, Organism=Saccharomyces cerevisiae, GI6324778, Length=415, Percent_Identity=34.6987951807229, Blast_Score=228, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6321856, Length=379, Percent_Identity=37.9947229551451, Blast_Score=226, Evalue=5e-60, Organism=Saccharomyces cerevisiae, GI6322912, Length=334, Percent_Identity=37.7245508982036, Blast_Score=222, Evalue=1e-58, Organism=Saccharomyces cerevisiae, GI6322323, Length=334, Percent_Identity=37.7245508982036, Blast_Score=222, Evalue=1e-58, Organism=Saccharomyces cerevisiae, GI6325138, Length=373, Percent_Identity=36.1930294906166, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6323021, Length=355, Percent_Identity=39.4366197183099, Blast_Score=219, Evalue=9e-58, Organism=Saccharomyces cerevisiae, GI6320224, Length=348, Percent_Identity=34.4827586206897, Blast_Score=218, Evalue=2e-57, Organism=Saccharomyces cerevisiae, GI6321963, Length=384, Percent_Identity=35.4166666666667, Blast_Score=204, Evalue=4e-53, Organism=Saccharomyces cerevisiae, GI6320449, Length=371, Percent_Identity=33.6927223719677, Blast_Score=198, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6322427, Length=363, Percent_Identity=33.6088154269972, Blast_Score=195, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6320119, Length=384, Percent_Identity=32.03125, Blast_Score=190, Evalue=5e-49, Organism=Saccharomyces cerevisiae, GI6323947, Length=409, Percent_Identity=33.0073349633252, Blast_Score=186, Evalue=5e-48, Organism=Saccharomyces cerevisiae, GI6324620, Length=384, Percent_Identity=31.25, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6319618, Length=412, Percent_Identity=30.8252427184466, Blast_Score=181, Evalue=3e-46, Organism=Saccharomyces cerevisiae, GI6319714, Length=366, Percent_Identity=32.5136612021858, Blast_Score=180, Evalue=5e-46, Organism=Saccharomyces cerevisiae, GI6321111, Length=369, Percent_Identity=31.1653116531165, Blast_Score=168, Evalue=2e-42, Organism=Saccharomyces cerevisiae, GI6321267, Length=359, Percent_Identity=30.08356545961, Blast_Score=156, Evalue=6e-39, Organism=Saccharomyces cerevisiae, GI6320400, Length=383, Percent_Identity=31.0704960835509, Blast_Score=154, Evalue=3e-38, Organism=Saccharomyces cerevisiae, GI6320173, Length=203, Percent_Identity=40.8866995073892, Blast_Score=151, Evalue=3e-37, Organism=Saccharomyces cerevisiae, GI6323306, Length=430, Percent_Identity=24.1860465116279, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6322876, Length=405, Percent_Identity=28.8888888888889, Blast_Score=120, Evalue=7e-28, Organism=Saccharomyces cerevisiae, GI6324366, Length=376, Percent_Identity=26.063829787234, Blast_Score=110, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6321374, Length=423, Percent_Identity=25.0591016548463, Blast_Score=103, Evalue=5e-23, Organism=Drosophila melanogaster, GI28574962, Length=383, Percent_Identity=37.597911227154, Blast_Score=251, Evalue=8e-67, Organism=Drosophila melanogaster, GI21355075, Length=346, Percent_Identity=39.5953757225434, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI24662330, Length=362, Percent_Identity=38.121546961326, Blast_Score=241, Evalue=7e-64, Organism=Drosophila melanogaster, GI281361218, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24644481, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24583281, Length=376, Percent_Identity=34.5744680851064, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24644483, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24583279, Length=376, Percent_Identity=34.5744680851064, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24644487, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI45551833, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24644485, Length=381, Percent_Identity=36.4829396325459, Blast_Score=241, Evalue=1e-63, Organism=Drosophila melanogaster, GI24644479, Length=381, Percent_Identity=36.4829396325459, Blast_Score=240, Evalue=1e-63, Organism=Drosophila melanogaster, GI24584399, Length=363, Percent_Identity=36.3636363636364, Blast_Score=237, Evalue=1e-62, Organism=Drosophila melanogaster, GI24642151, Length=346, Percent_Identity=39.3063583815029, Blast_Score=235, Evalue=7e-62, Organism=Drosophila melanogaster, GI18857967, Length=376, Percent_Identity=35.1063829787234, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI24585582, Length=370, Percent_Identity=36.4864864864865, Blast_Score=224, Evalue=1e-58, Organism=Drosophila melanogaster, GI24645031, Length=340, Percent_Identity=36.1764705882353, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI17977678, Length=365, Percent_Identity=37.5342465753425, Blast_Score=222, Evalue=5e-58, Organism=Drosophila melanogaster, GI21356161, Length=398, Percent_Identity=37.1859296482412, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI281365720, Length=319, Percent_Identity=39.1849529780564, Blast_Score=217, Evalue=2e-56, Organism=Drosophila melanogaster, GI24582080, Length=328, Percent_Identity=35.9756097560976, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24582078, Length=328, Percent_Identity=35.9756097560976, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI17136248, Length=328, Percent_Identity=35.9756097560976, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24582075, Length=328, Percent_Identity=35.9756097560976, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI17985987, Length=364, Percent_Identity=35.7142857142857, Blast_Score=208, Evalue=6e-54, Organism=Drosophila melanogaster, GI24584994, Length=373, Percent_Identity=36.4611260053619, Blast_Score=204, Evalue=1e-52, Organism=Drosophila melanogaster, GI28575014, Length=412, Percent_Identity=33.495145631068, Blast_Score=199, Evalue=4e-51, Organism=Drosophila melanogaster, GI17136814, Length=374, Percent_Identity=36.096256684492, Blast_Score=198, Evalue=9e-51, Organism=Drosophila melanogaster, GI28571808, Length=349, Percent_Identity=35.5300859598854, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI28571809, Length=349, Percent_Identity=35.5300859598854, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24581954, Length=378, Percent_Identity=31.4814814814815, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24581952, Length=378, Percent_Identity=31.4814814814815, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24581956, Length=378, Percent_Identity=31.4814814814815, Blast_Score=186, Evalue=4e-47, Organism=Drosophila melanogaster, GI24666101, Length=385, Percent_Identity=33.2467532467532, Blast_Score=181, Evalue=2e-45, Organism=Drosophila melanogaster, GI24642822, Length=371, Percent_Identity=31.266846361186, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI20130173, Length=445, Percent_Identity=31.9101123595506, Blast_Score=172, Evalue=4e-43, Organism=Drosophila melanogaster, GI17647335, Length=359, Percent_Identity=30.9192200557103, Blast_Score=172, Evalue=7e-43, Organism=Drosophila melanogaster, GI18859659, Length=421, Percent_Identity=31.8289786223278, Blast_Score=169, Evalue=5e-42, Organism=Drosophila melanogaster, GI28571338, Length=421, Percent_Identity=31.8289786223278, Blast_Score=169, Evalue=6e-42, Organism=Drosophila melanogaster, GI21355559, Length=382, Percent_Identity=34.0314136125654, Blast_Score=166, Evalue=4e-41, Organism=Drosophila melanogaster, GI24643725, Length=408, Percent_Identity=28.6764705882353, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI24640164, Length=353, Percent_Identity=27.4787535410765, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI24668515, Length=325, Percent_Identity=29.8461538461538, Blast_Score=128, Evalue=1e-29, Organism=Drosophila melanogaster, GI19920478, Length=381, Percent_Identity=27.2965879265092, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI17136666, Length=429, Percent_Identity=28.6713286713287, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI62472181, Length=123, Percent_Identity=34.9593495934959, Blast_Score=72, Evalue=8e-13, Organism=Drosophila melanogaster, GI24664230, Length=123, Percent_Identity=34.9593495934959, Blast_Score=72, Evalue=8e-13, Organism=Drosophila melanogaster, GI24664226, Length=123, Percent_Identity=34.9593495934959, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 56739; Mature: 56608
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS00648 RIBONUCLEASE_P
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTL CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCEEECCHHHHCCCCCCCCCEE AFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQ EEEECHHHHCCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP HHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHCCC PSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH YVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLV HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEE ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL EECHHHCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHH ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCHHHHHHH LLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYV HHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEE DLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA EECCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCC >Mature Secondary Structure GPERQSMEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTL CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCEEECCHHHHCCCCCCCCCEE AFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQ EEEECHHHHCCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP HHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHCCC PSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL CCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH YVASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLV HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEE ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL EECHHHCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHH ERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLHLDFAGRLFSEGRVEVVAA HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCHHHHHHH LLALLLGGAPKEKSLLTGEEGWRTYKATGPRLSLPRLVALLKGQGLEVGKIAEAEGGLYV HHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEE DLRPEARPEVAGLRLEPARRVEGLLEIPSRTRRPARA EECCCCCCCCCCCCCCHHHHHHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA