| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is ycbZ [H]
Identifier: 55979992
GI number: 55979992
Start: 23080
End: 25173
Strand: Direct
Name: ycbZ [H]
Synonym: TTHA0023
Alternate gene names: 55979992
Gene position: 23080-25173 (Clockwise)
Preceding gene: 55979985
Following gene: 55979994
Centisome position: 1.25
GC content: 72.3
Gene sequence:
>2094_bases ATGCGGGTCGCCTCCGTGCGCTGGTTCACCCCGCCCACCCGTCCCCGGCCCGCCCCCCTCTTCTTCGGGCAGGAGCGAGC GCTCAGGGCTCTCGAGGCCGCCTTCCTCCACCGGGGGCACGGCTACCTGGTGGGGCCGAGCGGCCTCGGCAAGCGCGCCC GGCTCCTCGCCTTCCTCGAGGGCCGGGCCTTCCCCAAGGAAGAGCTCGTCTACCTTCCCCTGGGGGAGGAGGCCTTCCCC CTCCTCCTCCCCGAGGGGGAGGGCAGGGCCTTGGTGGAAGGGGTGGAGGCCCTCTTCGCCGAGTTCACCCCCGGCCTTTT CCGGGAGAAGGGCTTTCTCTACGCGAAGAACCTGGTGGAGTCCCGCCACGAGAGGGAGGCGGAGGCCCTGCTCCAGACCC TCGCCCAAGAGGCCAAGGCCCACGGCTTCGCCCTCGCGGAGGAGGAAGGGGGGTTCACCCTCACGGGCCAAGGCCCCCTC CCCCCGGAGCTTTCCGCCAAGCTGGAGGAGACCGTTTTGGCCTACGTGGAGGTGCGGCAGCGGGCCCAGGCCGAGGTGGC GGCCCTGCGCCGCAGCTTCGCCGAGCGCCTCCTCCAGCCCCGGGTGGAAGGCCTGAAGGCGCGCTTCCCCGAGGCCGCCC GGTATCTGGACTGGCTCCTGGAGTCCCTCCTCCGGGCCGCGGCCCTGGAGGAGGAGGTGGAGGGCGAGGCCCTCCTCCCC CGCCTCCTCGTGGAAGGGGGGACGCGGGTGGTCTACGAGCCGAACCCCACCCCGGAAAGGCTTTTCGGCCACCTGGAGTA CGAGGTCCGGGAGGGGGTCCTCACCACCCACCTGGGCCTCCTCCGGCCCGGGGCCCTGATGCGGGCCGCGGGGGGGGTTT TGGTCCTCGAGGCCCACCGGGTGCTGGAGCTCGGGAGCTACCCCCTGCTCAAGCGGAGCCTGGCCACGGGGGAGATCGAG CCCCTCGCCCCCAGGCCCGAGGTGCGGGGCCCCAGGCTCCAACCCGCCCCCCTCAAGGCCCAGGTCTTCCTGGTGGGCCC GCCGGAGGTCATCGCCCTTCTGGAGGAGGACGAGGAGTTCTTGGAGCTCTTCCCCTTCCGGGTGGAGTTCAACCCCGAGA TGCCCTACACCGAGGCGCACGTGGCCCACCTGGGAGGCTTTCTGGAGGCCCAGGGGGTGCGCCTCCTCCCGGAGGGGCTC GCCGCCCTCGCCGACGAGGCCCGGCGCATGGCCGGACACCAGGAAAGGCTGGACGCCCGCATCTACCGCCTCCTGGACCT GGCCCGGGAGGCCGCCCGCTACCAGGACCCCGTGGGCCGGGAAGGGGTGGAGCGGGCCCTAAAGGCCCGGGAGGACCGCT TCGCCCTGGAGCAGGAGCTCTTCCTCAAGGACGTGGAGGAAGGGGTGGTGGCCCTGGAGGTGACGGGGGAGCGGGTGGGG GAGGTGAACGGCCTCGTGGTCCTCGAGGGCCCCCTCCCCACGGGCCGCCCCGTGCGCATCACCGCCCAGGCGGGGCCCGG CCGGGAGGGGATCCTCTCCATTGACCGGGAGGTGGGCCTCGGGGGGCAGGTCTTCCACAAGGCCGTCCTCACCCTGGCGG GGTACCTCCGGGGCACCTACGCGCAGCTCGGGGCCCTCTCCGCCACGGTGAGCCTGGTCTTTGAGCAAAGCTACGGGAGC CTCGAGGGGGACTCGGCGGGCCTCGCCGAGCTTCTGGCGGTGCTTTCCGCCATCTCCGGCCTCCCCCTAAGGCAGGACCT GGCGGTGACCGGGGCCGTGGACCAGACGGGAAGGGTCCTCGCCGTGGGCCGGGTGGCGGAGAAGGTGGAGGGCTTCTTCC GCGTCTGCCAGACCCTGGGCCTCACCGGCACCCAGGGGGTGGTCCTCCCCAAGGCCAACCTCCCCCACCTCACCCTGAGG CGGGAGGTGGTAGAGGCGGTGGAGGAGGGTGTCTTCCACCTCTTCGCCGTGGAGGAGGTGGACGAGGCGGTGGAACTCCT CTTCGGGCGCAGGGCCTACTGGGTGCACGAGAAGGTGCGGGAGGCCCTGGAGCACTTCCAGAAGCTGGAGAACGGGGACG GGGAGAAAGGCTAA
Upstream 100 bases:
>100_bases GCAAGAATCATTCCCAGCACTTCCACCTTGACCATCCTTCTCCCCCCTTTACGGCCAGTCTACCCGAAGCCCCCAAGGCG GGACCGGTATAGTGTTCCCC
Downstream 100 bases:
>100_bases GCACCCCACCGCGGCTTTCGCCGCGGTGGGGGCCCCAAAAGGAAGCTTTCCAAGCTTTATTGCGGGCAACCCGTGGTGCG AAATCAACGCGCAGCCCCTT
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 697; Mature: 697
Protein sequence:
>697_residues MRVASVRWFTPPTRPRPAPLFFGQERALRALEAAFLHRGHGYLVGPSGLGKRARLLAFLEGRAFPKEELVYLPLGEEAFP LLLPEGEGRALVEGVEALFAEFTPGLFREKGFLYAKNLVESRHEREAEALLQTLAQEAKAHGFALAEEEGGFTLTGQGPL PPELSAKLEETVLAYVEVRQRAQAEVAALRRSFAERLLQPRVEGLKARFPEAARYLDWLLESLLRAAALEEEVEGEALLP RLLVEGGTRVVYEPNPTPERLFGHLEYEVREGVLTTHLGLLRPGALMRAAGGVLVLEAHRVLELGSYPLLKRSLATGEIE PLAPRPEVRGPRLQPAPLKAQVFLVGPPEVIALLEEDEEFLELFPFRVEFNPEMPYTEAHVAHLGGFLEAQGVRLLPEGL AALADEARRMAGHQERLDARIYRLLDLAREAARYQDPVGREGVERALKAREDRFALEQELFLKDVEEGVVALEVTGERVG EVNGLVVLEGPLPTGRPVRITAQAGPGREGILSIDREVGLGGQVFHKAVLTLAGYLRGTYAQLGALSATVSLVFEQSYGS LEGDSAGLAELLAVLSAISGLPLRQDLAVTGAVDQTGRVLAVGRVAEKVEGFFRVCQTLGLTGTQGVVLPKANLPHLTLR REVVEAVEEGVFHLFAVEEVDEAVELLFGRRAYWVHEKVREALEHFQKLENGDGEKG
Sequences:
>Translated_697_residues MRVASVRWFTPPTRPRPAPLFFGQERALRALEAAFLHRGHGYLVGPSGLGKRARLLAFLEGRAFPKEELVYLPLGEEAFP LLLPEGEGRALVEGVEALFAEFTPGLFREKGFLYAKNLVESRHEREAEALLQTLAQEAKAHGFALAEEEGGFTLTGQGPL PPELSAKLEETVLAYVEVRQRAQAEVAALRRSFAERLLQPRVEGLKARFPEAARYLDWLLESLLRAAALEEEVEGEALLP RLLVEGGTRVVYEPNPTPERLFGHLEYEVREGVLTTHLGLLRPGALMRAAGGVLVLEAHRVLELGSYPLLKRSLATGEIE PLAPRPEVRGPRLQPAPLKAQVFLVGPPEVIALLEEDEEFLELFPFRVEFNPEMPYTEAHVAHLGGFLEAQGVRLLPEGL AALADEARRMAGHQERLDARIYRLLDLAREAARYQDPVGREGVERALKAREDRFALEQELFLKDVEEGVVALEVTGERVG EVNGLVVLEGPLPTGRPVRITAQAGPGREGILSIDREVGLGGQVFHKAVLTLAGYLRGTYAQLGALSATVSLVFEQSYGS LEGDSAGLAELLAVLSAISGLPLRQDLAVTGAVDQTGRVLAVGRVAEKVEGFFRVCQTLGLTGTQGVVLPKANLPHLTLR REVVEAVEEGVFHLFAVEEVDEAVELLFGRRAYWVHEKVREALEHFQKLENGDGEKG >Mature_697_residues MRVASVRWFTPPTRPRPAPLFFGQERALRALEAAFLHRGHGYLVGPSGLGKRARLLAFLEGRAFPKEELVYLPLGEEAFP LLLPEGEGRALVEGVEALFAEFTPGLFREKGFLYAKNLVESRHEREAEALLQTLAQEAKAHGFALAEEEGGFTLTGQGPL PPELSAKLEETVLAYVEVRQRAQAEVAALRRSFAERLLQPRVEGLKARFPEAARYLDWLLESLLRAAALEEEVEGEALLP RLLVEGGTRVVYEPNPTPERLFGHLEYEVREGVLTTHLGLLRPGALMRAAGGVLVLEAHRVLELGSYPLLKRSLATGEIE PLAPRPEVRGPRLQPAPLKAQVFLVGPPEVIALLEEDEEFLELFPFRVEFNPEMPYTEAHVAHLGGFLEAQGVRLLPEGL AALADEARRMAGHQERLDARIYRLLDLAREAARYQDPVGREGVERALKAREDRFALEQELFLKDVEEGVVALEVTGERVG EVNGLVVLEGPLPTGRPVRITAQAGPGREGILSIDREVGLGGQVFHKAVLTLAGYLRGTYAQLGALSATVSLVFEQSYGS LEGDSAGLAELLAVLSAISGLPLRQDLAVTGAVDQTGRVLAVGRVAEKVEGFFRVCQTLGLTGTQGVVLPKANLPHLTLR REVVEAVEEGVFHLFAVEEVDEAVELLFGRRAYWVHEKVREALEHFQKLENGDGEKG
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=524, Percent_Identity=32.2519083969466, Blast_Score=191, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 76496; Mature: 76496
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVASVRWFTPPTRPRPAPLFFGQERALRALEAAFLHRGHGYLVGPSGLGKRARLLAFLE CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH GRAFPKEELVYLPLGEEAFPLLLPEGEGRALVEGVEALFAEFTPGLFREKGFLYAKNLVE CCCCCHHCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH SRHEREAEALLQTLAQEAKAHGFALAEEEGGFTLTGQGPLPPELSAKLEETVLAYVEVRQ HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH RAQAEVAALRRSFAERLLQPRVEGLKARFPEAARYLDWLLESLLRAAALEEEVEGEALLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RLLVEGGTRVVYEPNPTPERLFGHLEYEVREGVLTTHLGLLRPGALMRAAGGVLVLEAHR HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHCCCEEEEEHHH VLELGSYPLLKRSLATGEIEPLAPRPEVRGPRLQPAPLKAQVFLVGPPEVIALLEEDEEF HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHH LELFPFRVEFNPEMPYTEAHVAHLGGFLEAQGVRLLPEGLAALADEARRMAGHQERLDAR HHHCCCEEEECCCCCCCHHHHHHHCCHHHCCCCEECHHHHHHHHHHHHHHCCHHHHHHHH IYRLLDLAREAARYQDPVGREGVERALKAREDRFALEQELFLKDVEEGVVALEVTGERVG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHC EVNGLVVLEGPLPTGRPVRITAQAGPGREGILSIDREVGLGGQVFHKAVLTLAGYLRGTY CCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHH AQLGALSATVSLVFEQSYGSLEGDSAGLAELLAVLSAISGLPLRQDLAVTGAVDQTGRVL HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEE AVGRVAEKVEGFFRVCQTLGLTGTQGVVLPKANLPHLTLRREVVEAVEEGVFHLFAVEEV EHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEHHHHHH DEAVELLFGRRAYWVHEKVREALEHFQKLENGDGEKG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRVASVRWFTPPTRPRPAPLFFGQERALRALEAAFLHRGHGYLVGPSGLGKRARLLAFLE CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH GRAFPKEELVYLPLGEEAFPLLLPEGEGRALVEGVEALFAEFTPGLFREKGFLYAKNLVE CCCCCHHCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHH SRHEREAEALLQTLAQEAKAHGFALAEEEGGFTLTGQGPLPPELSAKLEETVLAYVEVRQ HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH RAQAEVAALRRSFAERLLQPRVEGLKARFPEAARYLDWLLESLLRAAALEEEVEGEALLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RLLVEGGTRVVYEPNPTPERLFGHLEYEVREGVLTTHLGLLRPGALMRAAGGVLVLEAHR HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHCCCEEEEEHHH VLELGSYPLLKRSLATGEIEPLAPRPEVRGPRLQPAPLKAQVFLVGPPEVIALLEEDEEF HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHH LELFPFRVEFNPEMPYTEAHVAHLGGFLEAQGVRLLPEGLAALADEARRMAGHQERLDAR HHHCCCEEEECCCCCCCHHHHHHHCCHHHCCCCEECHHHHHHHHHHHHHHCCHHHHHHHH IYRLLDLAREAARYQDPVGREGVERALKAREDRFALEQELFLKDVEEGVVALEVTGERVG HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHC EVNGLVVLEGPLPTGRPVRITAQAGPGREGILSIDREVGLGGQVFHKAVLTLAGYLRGTY CCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEECHHCCCCHHHHHHHHHHHHHHHHHHH AQLGALSATVSLVFEQSYGSLEGDSAGLAELLAVLSAISGLPLRQDLAVTGAVDQTGRVL HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEE AVGRVAEKVEGFFRVCQTLGLTGTQGVVLPKANLPHLTLRREVVEAVEEGVFHLFAVEEV EHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEHHHHHH DEAVELLFGRRAYWVHEKVREALEHFQKLENGDGEKG HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]