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The map label for this gene is cph2 [H]

Identifier: 54296901

GI number: 54296901

Start: 1045949

End: 1047082

Strand: Direct

Name: cph2 [H]

Synonym: lpp0942

Alternate gene names: 54296901

Gene position: 1045949-1047082 (Clockwise)

Preceding gene: 54296894

Following gene: 54296903

Centisome position: 29.85

GC content: 33.07

Gene sequence:

>1134_bases
ATGACTTCCTCCAAGCATTACAAGGAAAGTATGACCTTGCTATTTGAGGGATCTCTAAGAGCGATTCCGTTCAATATTAT
ATTGGCTACATTGCTTGCCCTTGACCTTGTTTATAGTGATGTGCCTGCATTAATAATAGGGGCATGGTTTTTCGGTATTG
TCTTTATAAGCTTGGTAAGAAGTTATTTCTGCTGGAAAATAATTAAGAGGGGAGTAGAAAAAAATAGAATTCAAGCCACT
TTGATCGAGTTTTTCCTTCTTACATTTGTTACGGGCAGTATATGGGGCGCATGTTACTTCATTACACTGCCTTATGTAAA
TGATCTGCATGAATTTATTATTATTTTAGTGTTTGGTGGAATGTGCGCAGGCGCGATCGCTTCTCTGTCTATTTATTTAC
CAGCTTATTATGCCTATGTTTTTCCAATGCTTTTACCAGTCATTGTTTATAATTATGCCTTGTTAGATGTCGATAGAACG
ATGTTAGCAACCATGTTTCTAATATTTATTGCCATGCTTATTATTTCTGCAAAGATTAATCATAGATTGCTCAATGAAAA
TTTTCGATTATTCAATGAAAAAGAACTATTAATCAATGAATTGAAAGTAATGTCAATCACTGATTCTTTGTCGGGGTTAT
ATAACAGGAGATATTTTGACAACATATTTCCACAAGAGTTTAATCGAGCAAGACGCAATCAATATTTTTTAAGCCTGGTA
TCAATAGACATAGATAATTTTAAATTAATCAATGATAATTTGGGGCATCCTTTTGGCGATAAAGTCCTGATTAGCATCGC
TGATTTATTAAAAAAAATATTTCGACGTTCAAACGATATACTGTTTCGGCTTGGCGGAGACGAATTTGCAATAATCATCG
CTAATCAGCCGATTAAAGAAACAATATCTATTTGTGAAACAATTAAAAATCCTTTTAAAACAGAAAACTTGAATCATACT
TATGACTCAAACGAGCAATTATTCATGAGTCATGTCACTTTAAGCATAGGGATTGTTTATATTCATTTTGAAAGTTCAGC
CAGTATAGAGCATGCAATTACTGCGGCAGATAAGGCATTATATCAAGCTAAAAAAAAAGGAAAAAACCAAATTGTAGTAA
AAAAGCTACTTTAA

Upstream 100 bases:

>100_bases
GGATAAAAAATTTTGAATAGGTTTATACAAAAGTGTTCTTTAATTAGCCGGTGTTCTATAATTAAAAGGAATGGATATCA
ATTAATGGACATTGGATAAG

Downstream 100 bases:

>100_bases
GAAGATGACATTCTATCTTTAACTGAGATGGCGCCTGGAAGCTGCGTCCTAGTTTAATGGATTATAAGTTGACAGTAAAT
CCTAATAAAATTCCATGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRIQAT
LIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRT
MLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENLNHT
YDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL

Sequences:

>Translated_377_residues
MTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRIQAT
LIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRT
MLATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENLNHT
YDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL
>Mature_376_residues
TSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVRSYFCWKIIKRGVEKNRIQATL
IEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGGMCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRTM
LATMFLIFIAMLIISAKINHRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVS
IDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENLNHTY
DSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKALYQAKKKGKNQIVVKKLL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.7954545454545, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=32.7485380116959, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=34.5238095238095, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=32.967032967033, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=225, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=35.3591160220994, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=221, Percent_Identity=27.1493212669683, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=29.9465240641711, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=35, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=30.4878048780488, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=28.6486486486486, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=207, Percent_Identity=27.0531400966184, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=25.9887005649718, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43190; Mature: 43059

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVR
CCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SYFCWKIIKRGVEKNRIQATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHH
MCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRTMLATMFLIFIAMLIISAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEE
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKE
EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISICETIKNPFKTENLNHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKAL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHH
YQAKKKGKNQIVVKKLL
HHHHHCCCCEEEHEECC
>Mature Secondary Structure 
TSSKHYKESMTLLFEGSLRAIPFNIILATLLALDLVYSDVPALIIGAWFFGIVFISLVR
CCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SYFCWKIIKRGVEKNRIQATLIEFFLLTFVTGSIWGACYFITLPYVNDLHEFIIILVFGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHH
MCAGAIASLSIYLPAYYAYVFPMLLPVIVYNYALLDVDRTMLATMFLIFIAMLIISAKIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRLLNENFRLFNEKELLINELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLV
HHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEE
SIDIDNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKE
EECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISICETIKNPFKTENLNHTYDSNEQLFMSHVTLSIGIVYIHFESSASIEHAITAADKAL
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHH
YQAKKKGKNQIVVKKLL
HHHHHCCCCEEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]