Click here to switch to the map view.

The map label for this gene is 54295837

Identifier: 54295837

GI number: 54295837

Start: 3339283

End: 3341121

Strand: Reverse

Name: 54295837

Synonym: lpl2928

Alternate gene names: NA

Gene position: 3341121-3339283 (Counterclockwise)

Preceding gene: 54295838

Following gene: 54295835

Centisome position: 99.86

GC content: 36.76

Gene sequence:

>1839_bases
ATGGTCTACTCAAAACAAAGTGCTGCATTTCGTAGGGATAAACAACAATTTTTCGCCCAAATTCCGAAGGATAGTAAACT
GGACACAAAAATTGTAACAATTGATGATCGAGTAAACACTATAGATTACACTTTTTTACTACACCATAAACAGGATTTAG
AAGCTGAATTCACTCAAATGTTTACTGTGTTACAGCAGCAAGACGATGAAAATAAAGAAATTTTCTGGCTGTATTGCTAC
TATTGTGCGTCCTTGCTGGAGGCTTTCCACAAAGCTTATTCACAAAACAGTAAACAAGCTGAATATGCTAAAATAAAACA
AAAAATAAAAGACCATTTAAATAAGGTCAATGTCCAAGAGGAAGAATCTGGTTTTATTCAATCCTTGTACGATTCCTTTC
TTGGAGGTTTTCGCAATTTAATCAGCTCTCCATTGCACGCTTCCAAAATCAGAGATTATGTTGCCTACTCGAACTTGTGT
CGTATCTATTGGACGTTTTGTCGTTTGACTTTAACCAATGGATTGAGCGTAGCTCGAGACCTAAAAATTATTGAGAAGTT
GGATGCTATTTTAGGAACTCATACTGATGTCGATAAGATTATTTCAACTCTTCAAGCACCTACCGGGGTTATAACTTACT
TTAGTGTTGGTTTCTTTTTGATGCGCTTAATAATTGATGGTGGTATGCTATTAAGACATACCTTTTTCCCTACTGAATTG
GAAAAAGGCGCAGAAAATGGTTGTGAAATCCATCAAATGGATTATTTGCCAGGCCCAGCCAGTCTCGAAGCATATAGAAA
AAGTTATATTCTTGTTCATGAAGACAATCAAGAAGTATCACTCTATTACATTCCTAGAAGTGGTAAAGCAGAAAAATTAA
GCATTAAAGAAAATAACAAACTGAAAGATGCTTTACTGAAGAAAATGAATAAGGACACATCATCCCTTCGTTTGAGCTCA
ACTGAAGTAGAAGAGATAATCACTCATCAAACAGGGCATGTTCCCGAAGTGACTACGGCATGGGACAGATTTAAACATGA
GTTTTATAAACGACACTGTAATTTTGCCAATGACTTTGTTTGGGCTACAATCAACCTGCTTACCAACTATAATTACCTTT
TTAATATTTCCGGCCCTGCAGCAGGGATGATCACTTCTGTTTTTCTCGGGTTCGACGTATGCATGGCTTTATATAAGTGC
AACTTAGCCAAACAAGAGTATTTGATTAAGAAAGCTCAATATTTGCAGGAAATAGAAGACTATAATAATCCGGAAAAATT
CAAAAAAATGACTCCTGAACAGCGATTATTGCATATAGATATACTCAATAAGCAACTTAGAGAGCTTGAAATTAATTATA
AAACCCAGGAGGCTACTTTTTACTTTGTTGCCGCTGCTGCCGCCTTATTGATGATGGGATTTACTGCATCAATGCTGGTT
AGCCCGCCTGTATTAGTCGTTGGTTGTTTTTTTGCCTGTACTCTTGCTGTTGCAATGTATCTTTCTACGGGATCTTATTC
GAAATACGAGGAAAAAAGTTTGTATTTGGAAGAGGCTCAATTGACAGGTAAAAACCTTCCAGTTGCTCTTAAAGAATACG
AAACAGCTCGGAATGATTTTATTTTTACCATGGTAAAAAATACGGTCATGCCTATAGTTTTAATTACAACATTTGCAATT
TGCTGGCCTGCTGCAATTGTTTTAACAGCTATGTACATTGGTTATGAAATTTTCCATGCCTATGACCAACACTCTGAAGC
GAAAGCAGCCAAACAGTTGGCTTTAGCCGCTCCTTCAGAGGAAAAGGATGGATATATGGCTTTAGCCACTCCCAATTAG

Upstream 100 bases:

>100_bases
CAATGTGTAAAATATTAATACAAAAATGCTTGTCAAAATACATACCAAATGGTAACGTATTATTGTAAAACTTCCTGTGT
AATTTTTGTGAGTTCTTAAT

Downstream 100 bases:

>100_bases
GTTTCAGGGTACATTGCTTTGACGGCAGCGATATCTTTTTCACTTAAATGGGTTCGCTGCCCTATTTCAACTCCATCAAC
TAGAGGTATGATAGTTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 612; Mature: 612

Protein sequence:

>612_residues
MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYTFLLHHKQDLEAEFTQMFTVLQQQDDENKEIFWLYCY
YCASLLEAFHKAYSQNSKQAEYAKIKQKIKDHLNKVNVQEEESGFIQSLYDSFLGGFRNLISSPLHASKIRDYVAYSNLC
RIYWTFCRLTLTNGLSVARDLKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGFFLMRLIIDGGMLLRHTFFPTEL
EKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDNQEVSLYYIPRSGKAEKLSIKENNKLKDALLKKMNKDTSSLRLSS
TEVEEIITHQTGHVPEVTTAWDRFKHEFYKRHCNFANDFVWATINLLTNYNYLFNISGPAAGMITSVFLGFDVCMALYKC
NLAKQEYLIKKAQYLQEIEDYNNPEKFKKMTPEQRLLHIDILNKQLRELEINYKTQEATFYFVAAAAALLMMGFTASMLV
SPPVLVVGCFFACTLAVAMYLSTGSYSKYEEKSLYLEEAQLTGKNLPVALKEYETARNDFIFTMVKNTVMPIVLITTFAI
CWPAAIVLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSEEKDGYMALATPN

Sequences:

>Translated_612_residues
MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYTFLLHHKQDLEAEFTQMFTVLQQQDDENKEIFWLYCY
YCASLLEAFHKAYSQNSKQAEYAKIKQKIKDHLNKVNVQEEESGFIQSLYDSFLGGFRNLISSPLHASKIRDYVAYSNLC
RIYWTFCRLTLTNGLSVARDLKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGFFLMRLIIDGGMLLRHTFFPTEL
EKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDNQEVSLYYIPRSGKAEKLSIKENNKLKDALLKKMNKDTSSLRLSS
TEVEEIITHQTGHVPEVTTAWDRFKHEFYKRHCNFANDFVWATINLLTNYNYLFNISGPAAGMITSVFLGFDVCMALYKC
NLAKQEYLIKKAQYLQEIEDYNNPEKFKKMTPEQRLLHIDILNKQLRELEINYKTQEATFYFVAAAAALLMMGFTASMLV
SPPVLVVGCFFACTLAVAMYLSTGSYSKYEEKSLYLEEAQLTGKNLPVALKEYETARNDFIFTMVKNTVMPIVLITTFAI
CWPAAIVLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSEEKDGYMALATPN
>Mature_612_residues
MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYTFLLHHKQDLEAEFTQMFTVLQQQDDENKEIFWLYCY
YCASLLEAFHKAYSQNSKQAEYAKIKQKIKDHLNKVNVQEEESGFIQSLYDSFLGGFRNLISSPLHASKIRDYVAYSNLC
RIYWTFCRLTLTNGLSVARDLKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGFFLMRLIIDGGMLLRHTFFPTEL
EKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDNQEVSLYYIPRSGKAEKLSIKENNKLKDALLKKMNKDTSSLRLSS
TEVEEIITHQTGHVPEVTTAWDRFKHEFYKRHCNFANDFVWATINLLTNYNYLFNISGPAAGMITSVFLGFDVCMALYKC
NLAKQEYLIKKAQYLQEIEDYNNPEKFKKMTPEQRLLHIDILNKQLRELEINYKTQEATFYFVAAAAALLMMGFTASMLV
SPPVLVVGCFFACTLAVAMYLSTGSYSKYEEKSLYLEEAQLTGKNLPVALKEYETARNDFIFTMVKNTVMPIVLITTFAI
CWPAAIVLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSEEKDGYMALATPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70148; Mature: 70148

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYTFLLHHKQDLEAEFTQM
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
FTVLQQQDDENKEIFWLYCYYCASLLEAFHKAYSQNSKQAEYAKIKQKIKDHLNKVNVQE
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
EESGFIQSLYDSFLGGFRNLISSPLHASKIRDYVAYSNLCRIYWTFCRLTLTNGLSVARD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGFFLMRLIIDGGMLLRHTFFPTEL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHH
EKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDNQEVSLYYIPRSGKAEKLSIKENNK
HHCCCCCCCEEEECCCCCCCHHHHHCCCEEEEEECCCEEEEEEECCCCCCCEEECCCCCC
LKDALLKKMNKDTSSLRLSSTEVEEIITHQTGHVPEVTTAWDRFKHEFYKRHCNFANDFV
HHHHHHHHHCCCCHHEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
WATINLLTNYNYLFNISGPAAGMITSVFLGFDVCMALYKCNLAKQEYLIKKAQYLQEIED
HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
YNNPEKFKKMTPEQRLLHIDILNKQLRELEINYKTQEATFYFVAAAAALLMMGFTASMLV
CCCHHHHHHCCCHHHEEHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH
SPPVLVVGCFFACTLAVAMYLSTGSYSKYEEKSLYLEEAQLTGKNLPVALKEYETARNDF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCE
IFTMVKNTVMPIVLITTFAICWPAAIVLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSE
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
EKDGYMALATPN
CCCCEEEEECCC
>Mature Secondary Structure
MVYSKQSAAFRRDKQQFFAQIPKDSKLDTKIVTIDDRVNTIDYTFLLHHKQDLEAEFTQM
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
FTVLQQQDDENKEIFWLYCYYCASLLEAFHKAYSQNSKQAEYAKIKQKIKDHLNKVNVQE
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
EESGFIQSLYDSFLGGFRNLISSPLHASKIRDYVAYSNLCRIYWTFCRLTLTNGLSVARD
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LKIIEKLDAILGTHTDVDKIISTLQAPTGVITYFSVGFFLMRLIIDGGMLLRHTFFPTEL
HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHH
EKGAENGCEIHQMDYLPGPASLEAYRKSYILVHEDNQEVSLYYIPRSGKAEKLSIKENNK
HHCCCCCCCEEEECCCCCCCHHHHHCCCEEEEEECCCEEEEEEECCCCCCCEEECCCCCC
LKDALLKKMNKDTSSLRLSSTEVEEIITHQTGHVPEVTTAWDRFKHEFYKRHCNFANDFV
HHHHHHHHHCCCCHHEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
WATINLLTNYNYLFNISGPAAGMITSVFLGFDVCMALYKCNLAKQEYLIKKAQYLQEIED
HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
YNNPEKFKKMTPEQRLLHIDILNKQLRELEINYKTQEATFYFVAAAAALLMMGFTASMLV
CCCHHHHHHCCCHHHEEHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHH
SPPVLVVGCFFACTLAVAMYLSTGSYSKYEEKSLYLEEAQLTGKNLPVALKEYETARNDF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCE
IFTMVKNTVMPIVLITTFAICWPAAIVLTAMYIGYEIFHAYDQHSEAKAAKQLALAAPSE
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
EKDGYMALATPN
CCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA