Click here to switch to the map view.

The map label for this gene is yraM [C]

Identifier: 54295832

GI number: 54295832

Start: 3331880

End: 3333691

Strand: Reverse

Name: yraM [C]

Synonym: lpl2923

Alternate gene names: 54295832

Gene position: 3333691-3331880 (Counterclockwise)

Preceding gene: 54295835

Following gene: 54295831

Centisome position: 99.64

GC content: 40.51

Gene sequence:

>1812_bases
ATGTTAATTAAACAATTAAAACTTCGCATGTTCTTAGTATTGGTATCTCTTTTTTTGCTTTGCCAATGCACAAAAACAGT
TAACTCAACCGAGCCTGTAGTAACAGTTAATAAAAAATTAAAAACCCCGTATTCATTACCTACTGCAGCATACTTGGCTA
TGGCTAAGAGTCAACAAGGCCATGAAAAGCAAAGCGCATTGATTTCCGCAGCTGGCCGTTTAATTACTGATGGGCAATGG
AAGCAAGGAACTGTCATTTTAGCACAAACTGGAGAATTAACAGTTGAGCAGGCTAATGAAAAGAATCTTTTACTGGCAAA
AGTCGACATTATGCGTGATAGGCCCAGAGATGCCTTAGCCAAGTTAGCTAGAATTAAAGAACCTGAAAGACTCTCATTAT
ATAATCAAATCCAATTTCACGAACAATTGGCAAAGTCATTTCGGTCCCTTGGTAGTTACTCTGAATCAGTTAGTGAGCGT
ATCAAGTTAGAATCATTGCTCCCTGATGAGGAAAGTCAGGCCAATAATCGGCGGGCTTTGTGGTTGACCTTAACCAGTTT
ACCTCAAGAGGAGCTGAATACAATGGCTCTGGAGACTGTGAACAAATCAGAAATGCAAGGCTGGTTGCAGCTGGCTGTTA
TTTCCCGCAAGTATAGAAATAACTCAAAGTCGTTGCTGGCTGCCTTGGATCAATGGCAGATACATTTTAGTAATCATCCA
GCAAATCAGATTTTGCCTAATCCCTTAGACAGCATATCAGGTAAATTATTAGCCCCACCTAAACAGGTCGCTTTGTTATT
GCCTTTAAGTGGCCCATTATCCGGACCGGGTAATGCTATACGGGAAGGCTTTATGGCAGCCTATAAGGCCAACAGGGGAG
ATGAATCAACAAAAATTAAAGTTTATGATACAAGCAAAGGCGATATAACGAACACATATCGCCAAGCTATTTCTGACGGT
GCCGAATATGTTGTTGGCCCTTTAACGAAAACTCAAGTCGCTACCATTGCATCAATGGAGCATCCGGTTCCTACCTTATT
GCTAAACGATACGGATACCAGCACACAAAGCAATTCTTATTCCTTAGGCTTATCCCCTGTTAATGAAGCGATTCAGGTTG
CAATAAAAGCAAGAAGCAAAGGATATAAAAAAGCGCTGATTATTGCCCCTAATAATGCCTGGGGTAATGAAGTAACGAAG
GCTTTTATCAATCAGTGGAATGAAGATGGGGGCCATATTGTTGACTCTCTTCGCTATGAAGCCAAACAAGATTTGAATAA
GAGCATGAAAGATTTTTTACAAATCACCAATAGCCAGGATCGCGAGAAAAAACTAAAGCAGGTATTAGGCTATAATTTCC
AATCGACTACGAGCCGAAGACAGGATTTTGATATGATATTTTTATTGGCTTATCCTTCCAAGGCCCGCCAAATTATGCCT
TTATTAAAATATTATTATGCCGGAGATGCTCCTGTGTACGCTACTTCCAGTGTTTATGGCGGTAGCGCCAATGCTTTGAA
GGATAAGGATTTGGATGGGATCATTTTTTGCGATATGCCTTGGGTATTTTCTCATCAGATGGGAACGAAAAACTGGCCTG
AACAATTCAATAGCTATAACAGGCTTTATGCTTTAGGCGTGGACAGTTATACCTTGGCTACCCAATTAAACCAACTGATA
TTATTTCCAGCTGATGGCTCTAACGATTCAACAGGTATTTTATATTTAAAGCCGACTCAACAAGTAGCCAGGGTTCTTGA
ATGGGGGCAATTTAAACAGGGTTTAGCCCATTCACTAGGCGATACTGTTTAG

Upstream 100 bases:

>100_bases
TTCCTATTGGGGTAGCAACTATATAGAGAGTTCCTAAACCTGTTGCTAGAGTGTTTGTCATAGTTTATCCTCTTGCGAAA
AGCAAATTTGGCGAATTAAC

Downstream 100 bases:

>100_bases
TTTTGAAGTGAGCCAAGAATAATGACCAAGAAAAAGGAAAGTTTGCTGAACAATTGGCTTTAAATTATTTAAAGGAAAAT
GGTCTTGCATTAGTAATGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKTPYSLPTAAYLAMAKSQQGHEKQSALISAAGRLITDGQW
KQGTVILAQTGELTVEQANEKNLLLAKVDIMRDRPRDALAKLARIKEPERLSLYNQIQFHEQLAKSFRSLGSYSESVSER
IKLESLLPDEESQANNRRALWLTLTSLPQEELNTMALETVNKSEMQGWLQLAVISRKYRNNSKSLLAALDQWQIHFSNHP
ANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGPGNAIREGFMAAYKANRGDESTKIKVYDTSKGDITNTYRQAISDG
AEYVVGPLTKTQVATIASMEHPVPTLLLNDTDTSTQSNSYSLGLSPVNEAIQVAIKARSKGYKKALIIAPNNAWGNEVTK
AFINQWNEDGGHIVDSLRYEAKQDLNKSMKDFLQITNSQDREKKLKQVLGYNFQSTTSRRQDFDMIFLLAYPSKARQIMP
LLKYYYAGDAPVYATSSVYGGSANALKDKDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYNRLYALGVDSYTLATQLNQLI
LFPADGSNDSTGILYLKPTQQVARVLEWGQFKQGLAHSLGDTV

Sequences:

>Translated_603_residues
MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKTPYSLPTAAYLAMAKSQQGHEKQSALISAAGRLITDGQW
KQGTVILAQTGELTVEQANEKNLLLAKVDIMRDRPRDALAKLARIKEPERLSLYNQIQFHEQLAKSFRSLGSYSESVSER
IKLESLLPDEESQANNRRALWLTLTSLPQEELNTMALETVNKSEMQGWLQLAVISRKYRNNSKSLLAALDQWQIHFSNHP
ANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGPGNAIREGFMAAYKANRGDESTKIKVYDTSKGDITNTYRQAISDG
AEYVVGPLTKTQVATIASMEHPVPTLLLNDTDTSTQSNSYSLGLSPVNEAIQVAIKARSKGYKKALIIAPNNAWGNEVTK
AFINQWNEDGGHIVDSLRYEAKQDLNKSMKDFLQITNSQDREKKLKQVLGYNFQSTTSRRQDFDMIFLLAYPSKARQIMP
LLKYYYAGDAPVYATSSVYGGSANALKDKDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYNRLYALGVDSYTLATQLNQLI
LFPADGSNDSTGILYLKPTQQVARVLEWGQFKQGLAHSLGDTV
>Mature_603_residues
MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKTPYSLPTAAYLAMAKSQQGHEKQSALISAAGRLITDGQW
KQGTVILAQTGELTVEQANEKNLLLAKVDIMRDRPRDALAKLARIKEPERLSLYNQIQFHEQLAKSFRSLGSYSESVSER
IKLESLLPDEESQANNRRALWLTLTSLPQEELNTMALETVNKSEMQGWLQLAVISRKYRNNSKSLLAALDQWQIHFSNHP
ANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGPGNAIREGFMAAYKANRGDESTKIKVYDTSKGDITNTYRQAISDG
AEYVVGPLTKTQVATIASMEHPVPTLLLNDTDTSTQSNSYSLGLSPVNEAIQVAIKARSKGYKKALIIAPNNAWGNEVTK
AFINQWNEDGGHIVDSLRYEAKQDLNKSMKDFLQITNSQDREKKLKQVLGYNFQSTTSRRQDFDMIFLLAYPSKARQIMP
LLKYYYAGDAPVYATSSVYGGSANALKDKDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYNRLYALGVDSYTLATQLNQLI
LFPADGSNDSTGILYLKPTQQVARVLEWGQFKQGLAHSLGDTV

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yraM [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=342, Percent_Identity=26.0233918128655, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 67225; Mature: 67225

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKTPYSLPTAAYLAMAKSQQG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCC
HEKQSALISAAGRLITDGQWKQGTVILAQTGELTVEQANEKNLLLAKVDIMRDRPRDALA
CHHHHHHHHHHCCCEECCCCCCCEEEEEECCCEEEECCCCCCEEEEEEHHHHCCCHHHHH
KLARIKEPERLSLYNQIQFHEQLAKSFRSLGSYSESVSERIKLESLLPDEESQANNRRAL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
WLTLTSLPQEELNTMALETVNKSEMQGWLQLAVISRKYRNNSKSLLAALDQWQIHFSNHP
EEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCC
ANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGPGNAIREGFMAAYKANRGDESTKIK
CHHCCCCCHHHHCCCEECCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VYDTSKGDITNTYRQAISDGAEYVVGPLTKTQVATIASMEHPVPTLLLNDTDTSTQSNSY
EEECCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCE
SLGLSPVNEAIQVAIKARSKGYKKALIIAPNNAWGNEVTKAFINQWNEDGGHIVDSLRYE
EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
AKQDLNKSMKDFLQITNSQDREKKLKQVLGYNFQSTTSRRQDFDMIFLLAYPSKARQIMP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
LLKYYYAGDAPVYATSSVYGGSANALKDKDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYN
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCHHHHCCCC
RLYALGVDSYTLATQLNQLILFPADGSNDSTGILYLKPTQQVARVLEWGQFKQGLAHSLG
EEEEECCCCHHHHHCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
DTV
CCC
>Mature Secondary Structure
MLIKQLKLRMFLVLVSLFLLCQCTKTVNSTEPVVTVNKKLKTPYSLPTAAYLAMAKSQQG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCC
HEKQSALISAAGRLITDGQWKQGTVILAQTGELTVEQANEKNLLLAKVDIMRDRPRDALA
CHHHHHHHHHHCCCEECCCCCCCEEEEEECCCEEEECCCCCCEEEEEEHHHHCCCHHHHH
KLARIKEPERLSLYNQIQFHEQLAKSFRSLGSYSESVSERIKLESLLPDEESQANNRRAL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
WLTLTSLPQEELNTMALETVNKSEMQGWLQLAVISRKYRNNSKSLLAALDQWQIHFSNHP
EEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCC
ANQILPNPLDSISGKLLAPPKQVALLLPLSGPLSGPGNAIREGFMAAYKANRGDESTKIK
CHHCCCCCHHHHCCCEECCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
VYDTSKGDITNTYRQAISDGAEYVVGPLTKTQVATIASMEHPVPTLLLNDTDTSTQSNSY
EEECCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCE
SLGLSPVNEAIQVAIKARSKGYKKALIIAPNNAWGNEVTKAFINQWNEDGGHIVDSLRYE
EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
AKQDLNKSMKDFLQITNSQDREKKLKQVLGYNFQSTTSRRQDFDMIFLLAYPSKARQIMP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
LLKYYYAGDAPVYATSSVYGGSANALKDKDLDGIIFCDMPWVFSHQMGTKNWPEQFNSYN
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCHHHHCCCC
RLYALGVDSYTLATQLNQLILFPADGSNDSTGILYLKPTQQVARVLEWGQFKQGLAHSLG
EEEEECCCCHHHHHCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
DTV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]