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The map label for this gene is yfjD [C]

Identifier: 54295593

GI number: 54295593

Start: 3059100

End: 3060365

Strand: Reverse

Name: yfjD [C]

Synonym: lpl2680

Alternate gene names: 54295593

Gene position: 3060365-3059100 (Counterclockwise)

Preceding gene: 54295594

Following gene: 54295592

Centisome position: 91.47

GC content: 38.63

Gene sequence:

>1266_bases
GTGCAACTTCCTCTTTCTACTTTGTTGGTTTTATTGTTTTTCCTAATTTGCCTGTCTGCTTTTTTTTCAGGTTCCGAAAT
TGGCATGATGTCTATCAATAGATATAAATTACGACACCTGGTAAAAAGCAATGATAAGCAAGCCATGCGGGTTAATTCCA
TGCTGGCTCGGCCTGATAAACTACTAAGTGTGGTTTTAATTGGGAATACTTTGGCAAATATAGTGGCATCGACTCTTGCC
ACTTTAATCGGGCAGCGGTTTTATGGGGATGCAGGGGTAGCTATAGCAACTGCCTTGTTGACTATACTGATCCTGGTTTT
TGCAGAAATGACTCCGAAAACTCTGGCTGCTATTTACCCTCAGCAAGTTGCTTTTGCATCCTCATTGCCGTTGAGCATTT
TACAATGGATTTTTTCTCCTTTGGTCCACTTAATCAGTTTGATTACCAATGGTATCCTAAGAGTATTTAACATATCGGTA
AAACGTATGCAAAAGGAGATGCTAACTGGTGAAGAGTTGCGATCAGTTGTGCATGAGGCGGGAGGATTAATGCCTGTAGA
GCATAAAAGTATGTTGATTAGTTTATTGGATCTGGAGCAAGCAACTGTTGAAGACATCATGGTTCCCAAAGCCGATATTG
TTGGGATTGATTTGGATTTACCCTGGATAGAACTTTTAGAGCAACTGGAAACAGCACAACATACAAGATTACCAATTTAT
CATGGTTCTATTGATCATTTGGCAGGGATGATCCACGTAAGAAATATTTTAAATTTAGCATTAGAAAATAAGTTGGATAT
GGAGAATTTGTTAAATAGTGCAGAAGTTCCCTATTTTATTCCAGAGGCTACCCCATTAAATATACAAATCCTTAATTTCA
GGAAAATGAAAAGAAGAAGTTGCTTTGTTGTGGATGAATATGGCGATATTCTTGGGCTTGTGACTATGGAAGATATTCTT
GAAGAAATAGTAGGTGAATTCACAACAGATATAGCTGCTTTAAGCCGTGATATAACTCCTCAGCAAGATGGGTCGGTCAT
AGTTGATGCCAGCATAACTATTCGCCATTTAAATCGCATGATGGGCTGGAGCCTGCCCTTAATCGGTCCAAGAACCCTAA
GTGGCCTGATTATCGAGCATTTAGGGTATATTCCCCCCCCTGACTCTTGCCTGGTTATTGATCATTATCATATTGAAATA
TTAAGGGTCAGCGATAATATGATAAGAGGTGTAAAGATGATTAAGACTAATAAAAAAAGAAAATAG

Upstream 100 bases:

>100_bases
TTATATCTTTAGCTATAATAGCGGCATCATTTCAGCCCCTACTACAAAACAGCAAGTTCTATTGTATAATTTGTCATTCT
TAAAAGTATAAGGATATTCA

Downstream 100 bases:

>100_bases
CTCGTATAGACTCTGACTCTCAATTTGCTTCCAGCTTGTCCCTATTTTAGCTTACTTAAATATTTATGCATTGATAAAGC
GATATAATTTATTCATTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRVFNISV
KRMQKEMLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK

Sequences:

>Translated_421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRVFNISV
KRMQKEMLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK
>Mature_421_residues
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDKLLSVVLIGNTLANIVASTLA
TLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYPQQVAFASSLPLSILQWIFSPLVHLISLITNGILRVFNISV
KRMQKEMLTGEELRSVVHEAGGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRSCFVVDEYGDILGLVTMEDIL
EEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRMMGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEI
LRVSDNMIRGVKMIKTNKKRK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=359, Percent_Identity=26.7409470752089, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI40068053, Length=339, Percent_Identity=23.598820058997, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI40068055, Length=352, Percent_Identity=23.5795454545455, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI94681046, Length=321, Percent_Identity=24.9221183800623, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI145693175, Length=396, Percent_Identity=47.7272727272727, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1790664, Length=438, Percent_Identity=24.6575342465753, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87082033, Length=239, Percent_Identity=31.3807531380753, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1786879, Length=235, Percent_Identity=25.531914893617, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788119, Length=267, Percent_Identity=25.4681647940075, Blast_Score=79, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71980512, Length=355, Percent_Identity=24.7887323943662, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=341, Percent_Identity=24.633431085044, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47029; Mature: 47029

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
LLSVVLIGNTLANIVASTLATLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QQVAFASSLPLSILQWIFSPLVHLISLITNGILRVFNISVKRMQKEMLTGEELRSVVHEA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEECHHHHHCCC
CFVVDEYGDILGLVTMEDILEEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRM
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH
MGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEILRVSDNMIRGVKMIKTNKKR
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCC
K
C
>Mature Secondary Structure
MQLPLSTLLVLLFFLICLSAFFSGSEIGMMSINRYKLRHLVKSNDKQAMRVNSMLARPDK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHH
LLSVVLIGNTLANIVASTLATLIGQRFYGDAGVAIATALLTILILVFAEMTPKTLAAIYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QQVAFASSLPLSILQWIFSPLVHLISLITNGILRVFNISVKRMQKEMLTGEELRSVVHEA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
GGLMPVEHKSMLISLLDLEQATVEDIMVPKADIVGIDLDLPWIELLEQLETAQHTRLPIY
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEE
HGSIDHLAGMIHVRNILNLALENKLDMENLLNSAEVPYFIPEATPLNIQILNFRKMKRRS
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEECHHHHHCCC
CFVVDEYGDILGLVTMEDILEEIVGEFTTDIAALSRDITPQQDGSVIVDASITIRHLNRM
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH
MGWSLPLIGPRTLSGLIIEHLGYIPPPDSCLVIDHYHIEILRVSDNMIRGVKMIKTNKKR
HCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]