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The map label for this gene is dotC

Identifier: 54295515

GI number: 54295515

Start: 2968608

End: 2969519

Strand: Direct

Name: dotC

Synonym: lpl2602

Alternate gene names: NA

Gene position: 2968608-2969519 (Clockwise)

Preceding gene: 54295514

Following gene: 54295516

Centisome position: 88.73

GC content: 41.01

Gene sequence:

>912_bases
ATGCGAAAATTTATTCTTAGTTTATCTATTTTGCTATCAGCCCTCCTGGTAGCCTGTTCTTCTCGTAATCATTACGGGGA
TACTGGCTCATTGGCAGGCCTTCAAGCGATGGCTGATTCAAAATACACCCGAGCTCAAAAAAAACAAAAAATGGGTAAAA
TTCGCGAGATGGCCCTTAAGGAAACCGCTTTAAGTGTTGGCGCCCAGGCTGGCTTAGCCTGGAGAGCAAAAATAATTGAC
GAGCAATTAAATAAACAGGCAAGGAATCTTGATGCAATTTATGATTTTAATTCCCTGGTCTTAGAGCATAATATTTTACC
TCCTGTATTACTTGAGGGAAGGAATACTTTGAATCTTGCAGATGCTCAAAGTATCCGTGTTTCAGATCGCACCTATAAAG
TCGCAAAACAAGCTCATTTCATTACCACTCCACCTACCTGGCGGCAATATTTGTGGATGGATTATGTGAAACCTGAAGCT
CCCAATGTCACTCTACTCCCCAAAACCAAGGCTGAAAAAGAAATATGGTGCATCTATACTGAAAGAGGGTGGAAAAATGG
TATAGATCAGGCAAACACCATTTTGGAAGAAAACATTGCCCGCATTAAAGAAGATTTCGGCGGTATGATTCTTTATAGAA
AATTACTGGCTATGAACATGGTATCTCCTCCTTATGTTTCTCATACTGACTTGGGCGTAACTGGGGATGGATCAGAAATT
CATATCGATGACAGGGTCTTGCGCATCACGGCGTTACCTGAACTCAATGTCAATAGTGCGGAATGGAGAGCTGCGGTCGC
CAAAGATGAAAATGCTCTCGAACGTTTCAAAAATATGGAAAAACTGGCAAATCAGGCTAAAATTGTTATAACGAACAAAT
CCTGGCAACCTATTATAGCACCAGTAAGTTAA

Upstream 100 bases:

>100_bases
GACGAGAATCTGGCCGAGATCCTTAGAGATATTGATTATCAAGCTGGGAAAAAAGCCAGTATTCATGTGTATCCTAACAG
TCAGGTCGTAGAATTGCGCT

Downstream 100 bases:

>100_bases
TGTCTATGGATAATATTAATTTAATGCCCGATGAGCCAACTCGTTTCACTCCAGTATTCATGGACAGAATGCTGGAGCAT
GCAGAAAGCCTGAATGCTTC

Product: defect in organelle trafficking lipoprotein DotC

Products: NA

Alternate protein names: TraI Protein; Lipoprotein; TraI Conjugal Transfer Protein; Conjugal Transfer Protein DotC/TraI; Relaxase TraI; DotC-Like Type IV Secretion System Protein; LysM Domain-Containing; Conjugal Transfer Protein; Type IV Secretion System Protein DotC; Defect In Organelle Trafficking Lipoprotein DotC

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRVSDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS

Sequences:

>Translated_303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRVSDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS
>Mature_303_residues
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALKETALSVGAQAGLAWRAKIID
EQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLADAQSIRVSDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEA
PNVTLLPKTKAEKEIWCIYTERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIAPVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34104; Mature: 34104

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ETALSVGAQAGLAWRAKIIDEQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCEECCCCEEEEC
DAQSIRVSDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEAPNVTLLPKTKAEKEIWCIYT
CCCEEEECHHHHHHHHHCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEE
ERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIA
EECCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
PVS
CCC
>Mature Secondary Structure
MRKFILSLSILLSALLVACSSRNHYGDTGSLAGLQAMADSKYTRAQKKQKMGKIREMALK
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ETALSVGAQAGLAWRAKIIDEQLNKQARNLDAIYDFNSLVLEHNILPPVLLEGRNTLNLA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCEECCCCEEEEC
DAQSIRVSDRTYKVAKQAHFITTPPTWRQYLWMDYVKPEAPNVTLLPKTKAEKEIWCIYT
CCCEEEECHHHHHHHHHCEEECCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEE
ERGWKNGIDQANTILEENIARIKEDFGGMILYRKLLAMNMVSPPYVSHTDLGVTGDGSEI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
HIDDRVLRITALPELNVNSAEWRAAVAKDENALERFKNMEKLANQAKIVITNKSWQPIIA
EECCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
PVS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA