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The map label for this gene is intZ [H]

Identifier: 54295400

GI number: 54295400

Start: 2826766

End: 2828007

Strand: Direct

Name: intZ [H]

Synonym: lpl2486

Alternate gene names: 54295400

Gene position: 2826766-2828007 (Clockwise)

Preceding gene: 54295399

Following gene: 54295401

Centisome position: 84.49

GC content: 43.4

Gene sequence:

>1242_bases
ATGATGGAAAGACAATTTACAGACGCCTATATTCGATCGCTAAAACCAAGATCTTCTCGCTATGAAGAATTCAGAGATGG
AGGTTTTGGAATCCGTGTCACCCCCAAAGGGCTAAAGACGTTTCTTTATCGTTACAGAATCAACGGTCAAAGGCATTTCA
TCACCATAGGCCACTACCCTGCTATGAGTTTATCCGAGGCCAGGAAACGTTTTATCGATTTAAGCGACATACGCCATGGC
GAGGTGAACCCAAAAGAACAGATTGCAGAACAAAAACAGAAAGAGCAAAGCACGGTAAAAAATCTGATACTCCACTGGTA
CACCAACTACATTGAAAAACACCGCGCCCAACCTCTGCAAATCTGGCAACACATCAAAGTAGATATCATTCCCCTATTGG
GCAATAAGAAACTGGAACACTTAAAAACAAGAGAAATCACCCAAGCCCTGGATAAAATTGTAGGCCGTGGCTCACCCGTT
CACGCAAACAAAGTACTAAGCACACTAAAGCAAGCCTTTAACTACGCAGTAAGCCGAGGCGAAATGCTGCTTAACCCTGC
CATGACCATACGAGCCAGAGACATAGGCGGTATAGAAAAACCCAGAGAGCGCTATTTATCCCTCGATGAAGTAAAAATCC
TCTGGCAATTCCTCGACAGCGAAGAACACGGCACTTCTTTTCAAATTCGAGCAGCTCTGAAAATCATCCTGCTAACAGGT
GTAAGAACAGGCGAAATCCGAGTAGCCAAATGGTCAGAATTCGATTTTGAAAACTCCTTATGGACTATCCCTGCCGAAAA
TACCAAAACCAATATCGTCATGAGAATTCACCTCACAGAAATGACTAAAAAGGTATTACGAGAACTCAAAACACACAGCG
ATTCGGAATACGTCATTACAGGCGCAGACGACCAAAGTATTTTATCCGACCGAGCTATGCCAAGAGCCGTAATCAGAATA
CAATCACGGGTCGGTATTCCTCATTGGACAGCACACGATTTAAGACGAACCTTTGCAACCCAGCTTGGTGAAGCGTTGCA
TGTTGATCCGGTGGTGATTGAGAAATGTTTAGGGCACAAGATGCCTAAAATAATGGCCACTTATAATAAGAATGAAATGT
TGCCTCAAAGAAAGGAAGCCCTTGAAAAATGGGCTAGGCTTCTTCATGATCAAGCTCAGCATCCAACCGCTTCCATTTCA
CTTGTTCCTAAGTTAAAAGGAATAGCCTCTGCAGAATTATAA

Upstream 100 bases:

>100_bases
TAATTTTTACCATCTGCTATACTTCAAAAAATATCAAACGATTTCATGTGAGATCTCACGAAAGTACACCTAGAAGTACA
CCTAATTTTTAAGTGGTGCA

Downstream 100 bases:

>100_bases
TAAGGTCGCAATTATGAGTAAAGAACCAACCAAAAGCTTAAAAATAAAAGACGAATTAACTGATTTCCTACTTTACACTT
CACCTAATGGGCAAGTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MMERQFTDAYIRSLKPRSSRYEEFRDGGFGIRVTPKGLKTFLYRYRINGQRHFITIGHYPAMSLSEARKRFIDLSDIRHG
EVNPKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPV
HANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTG
VRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVITGADDQSILSDRAMPRAVIRI
QSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWARLLHDQAQHPTASIS
LVPKLKGIASAEL

Sequences:

>Translated_413_residues
MMERQFTDAYIRSLKPRSSRYEEFRDGGFGIRVTPKGLKTFLYRYRINGQRHFITIGHYPAMSLSEARKRFIDLSDIRHG
EVNPKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPV
HANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTG
VRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVITGADDQSILSDRAMPRAVIRI
QSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWARLLHDQAQHPTASIS
LVPKLKGIASAEL
>Mature_413_residues
MMERQFTDAYIRSLKPRSSRYEEFRDGGFGIRVTPKGLKTFLYRYRINGQRHFITIGHYPAMSLSEARKRFIDLSDIRHG
EVNPKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQIWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPV
HANKVLSTLKQAFNYAVSRGEMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTG
VRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVITGADDQSILSDRAMPRAVIRI
QSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHKMPKIMATYNKNEMLPQRKEALEKWARLLHDQAQHPTASIS
LVPKLKGIASAEL

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=368, Percent_Identity=26.3586956521739, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788690, Length=398, Percent_Identity=26.1306532663317, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=25.2475247524752, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47717; Mature: 47717

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMERQFTDAYIRSLKPRSSRYEEFRDGGFGIRVTPKGLKTFLYRYRINGQRHFITIGHYP
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEECHHHHHHHHHHHEECCCEEEEEECCCC
AMSLSEARKRFIDLSDIRHGEVNPKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQ
CCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRG
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
EMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTG
CEEECCCCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCC
VRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVIT
CCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCEEEE
GADDQSILSDRAMPRAVIRIQSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHK
CCCCHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHCCC
MPKIMATYNKNEMLPQRKEALEKWARLLHDQAQHPTASISLVPKLKGIASAEL
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCC
>Mature Secondary Structure
MMERQFTDAYIRSLKPRSSRYEEFRDGGFGIRVTPKGLKTFLYRYRINGQRHFITIGHYP
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEECHHHHHHHHHHHEECCCEEEEEECCCC
AMSLSEARKRFIDLSDIRHGEVNPKEQIAEQKQKEQSTVKNLILHWYTNYIEKHRAQPLQ
CCCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IWQHIKVDIIPLLGNKKLEHLKTREITQALDKIVGRGSPVHANKVLSTLKQAFNYAVSRG
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
EMLLNPAMTIRARDIGGIEKPRERYLSLDEVKILWQFLDSEEHGTSFQIRAALKIILLTG
CEEECCCCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCC
VRTGEIRVAKWSEFDFENSLWTIPAENTKTNIVMRIHLTEMTKKVLRELKTHSDSEYVIT
CCCCCEEEEECCCCCCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCEEEE
GADDQSILSDRAMPRAVIRIQSRVGIPHWTAHDLRRTFATQLGEALHVDPVVIEKCLGHK
CCCCHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHCCC
MPKIMATYNKNEMLPQRKEALEKWARLLHDQAQHPTASISLVPKLKGIASAEL
CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]