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The map label for this gene is ltrA [H]

Identifier: 54295218

GI number: 54295218

Start: 2619173

End: 2620081

Strand: Direct

Name: ltrA [H]

Synonym: lpl2301

Alternate gene names: 54295218

Gene position: 2619173-2620081 (Clockwise)

Preceding gene: 54295217

Following gene: 54295219

Centisome position: 78.29

GC content: 35.86

Gene sequence:

>909_bases
ATGAATATTTTATCCTGTTTGAAAGGCTTTATTGCAACCGTTGATTGTAAAAGTTTTTCAAAGGCAGCACAAAAATTATA
TATATCCCCCTCTAAATTGAGCAAACAAATAACCTGGCTGGAGGAGGAATTAAAGGTTACTTTATTGGTACGCTCTACGA
CACGATTAACTGTAACTGATTCAGGTCATAGGTTGTATGAAAAGTCATTGCAGCTTTTCGAGCAATTAGAGGCAGTCAAA
GTCATTGCAACGCCTGATCAGCTCGAATTAAATGGCGTCATCAGGCTCTATCTTACTGTTACTCCGGCAATTCCCTATTT
AACCACATTAAGTATTCAATTCATGCGGCAATACCCCAAGATTGAAGTAGATATTATTGTCGGTTCGGATACAAAAGAAC
TCTATTCCTCTACCTTTGATCTGGCTATTTCATTTGATGATGTCAAACATTCAAAACTGGTGTGCAAAATGTTATTTTCA
ATTCAAAGAAAGGTCTTTGCCTCACCTGCTTATATTGCTCAACATGGACTTCCTCAAACACTCGACGAATTACCAAAGCA
TAATTGTTTGATTAATACTCTCTATGGCCTACAAAATAAATGGGTTTTTAACAAAAAAATCATTCATGTCTCGGGAAGTT
TTAAAAGCAACAATGCTGGTGTTTTAAAACAGGCTGCAGTAGCAGACGTGGGGATTCTGTGGGTGCCTTATTTTTCGGTT
TATGAAGAAATAAAAAATGGAGCATTAACTCCAGTATTGCCCCATGAATCTTCACCAGAAATCAATCTTTATGCAATTTG
CCCCAAGTCCACAGTCGATGAACAAAAAATTAATTTACTTTTGAGTTTTTTTTGTGAAAAAGCCTTGTCAGAGAACATTG
TGACATCTTTTATTGATGAAAATAATTAA

Upstream 100 bases:

>100_bases
AATATCAGCTTTCTCTGTCATGAAATCATTGTTGTTGGTTTACAAAACCGTCATCCAGGTCTATACCATTTAAAAAGATC
TCGATTAAGAAAATTTTAAG

Downstream 100 bases:

>100_bases
AGATAGATCAGTAATTTAATCTATTTTCTATTGCAAATTCAAAGAATTAGATTAATTTATCTAAGATTAAAGTGTCGCTT
ATTGGAGGGTAGCCCCTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTDSGHRLYEKSLQLFEQLEAVK
VIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFS
IQRKVFASPAYIAQHGLPQTLDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSV
YEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDENN

Sequences:

>Translated_302_residues
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTDSGHRLYEKSLQLFEQLEAVK
VIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFS
IQRKVFASPAYIAQHGLPQTLDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSV
YEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDENN
>Mature_302_residues
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTDSGHRLYEKSLQLFEQLEAVK
VIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPKIEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFS
IQRKVFASPAYIAQHGLPQTLDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSV
YEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDENN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=27.3684210526316, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=26.962457337884, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=27.027027027027, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789639, Length=276, Percent_Identity=27.1739130434783, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=23.0240549828179, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787128, Length=269, Percent_Identity=25.2788104089219, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=33.1491712707182, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787589, Length=259, Percent_Identity=22.007722007722, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786448, Length=246, Percent_Identity=25.2032520325203, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1788481, Length=187, Percent_Identity=28.8770053475936, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33987; Mature: 33987

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTD
CCHHHHHHHHHEECCHHHHHHHHHHEECCHHHHHHHHHHHHHCEEEEEEEECCEEEEEEC
SGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPK
CCHHHHHHHHHHHHHHHHEEEEECCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHCCC
IEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFSIQRKVFASPAYIAQHGLPQT
EEEEEEECCCHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHH
LDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSV
HHHCCCCCEEHHHHHCCCCCEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDE
HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NN
CC
>Mature Secondary Structure
MNILSCLKGFIATVDCKSFSKAAQKLYISPSKLSKQITWLEEELKVTLLVRSTTRLTVTD
CCHHHHHHHHHEECCHHHHHHHHHHEECCHHHHHHHHHHHHHCEEEEEEEECCEEEEEEC
SGHRLYEKSLQLFEQLEAVKVIATPDQLELNGVIRLYLTVTPAIPYLTTLSIQFMRQYPK
CCHHHHHHHHHHHHHHHHEEEEECCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHCCC
IEVDIIVGSDTKELYSSTFDLAISFDDVKHSKLVCKMLFSIQRKVFASPAYIAQHGLPQT
EEEEEEECCCHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHH
LDELPKHNCLINTLYGLQNKWVFNKKIIHVSGSFKSNNAGVLKQAAVADVGILWVPYFSV
HHHCCCCCEEHHHHHCCCCCEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YEEIKNGALTPVLPHESSPEINLYAICPKSTVDEQKINLLLSFFCEKALSENIVTSFIDE
HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]