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The map label for this gene is fni [H]

Identifier: 54294950

GI number: 54294950

Start: 2272307

End: 2273335

Strand: Direct

Name: fni [H]

Synonym: lpl2029

Alternate gene names: 54294950

Gene position: 2272307-2273335 (Clockwise)

Preceding gene: 54294948

Following gene: 54294951

Centisome position: 67.92

GC content: 41.98

Gene sequence:

>1029_bases
ATGCAAAACGAATACAGCCAATTTGAACAGCGTAAGCGCGATCACATAGAACTAGCCTTAATGCCAGCTAATCAAAGCAG
CGAGTTAAATCCCTTTGATCATTTTTCTTTGGTACATGAAGCCTTACCTGACCTTGATTTTAAAGACATTTCCATACAAA
GCATCCGGTTTAACAAACCGGTTGAAAAACCATTTATTATTAGTTCAATGACAGCCGGCCATTCCAATGCTATAGAAATT
AACTATCGATTAATGGAAGCTTGCTCAAAAACAAAATGGGCAATGGGTGTTGGTTCACAGCGAAGAGAATTAACTGACAA
ACAGGCTGCATTTGAGTGGGAGCCACTACGTCGTGATTTCCCCATGGTCAGCCTGTTTAGTAACCTGGGTATCGCTCAGT
TGATTGATACCCCAATTTCTGCAATCCAGCGCTTAATTGATACTTTGCACGCTGAAGCATTGATTATTCATTGCAACCCA
TTACAGGAGTGTATTCAACCTGAAGGAACAACTAATTTTCATGGGTGTTGGGCAGCATTGGAAGCATTAGTCAAAAAGAT
TAATTCTCCAGTTATAGTAAAAGAAACCGGTTGTGGCTTTTCAAAAAATACACTGCTCCGGTTAAATAATATAGGTGTTG
CCGCTGTTGATGTCAGTGGTGTGGGAGGTACGCATTGGGGGCGAATTGAAGGACATCGGGCAGACAAGGATCCGATAAGA
CATCGAACTGCTGATACTTTTCGAAATTGGGGCATTGATACTTTACAAAGCACTCATAACGCCATTAGCCTTAATCCCTC
CTTCGAAATTTGGGGTTCTGGCGGCGTAAGGAATGGTTTGGATGCTGCAAAACTGTTTGCGCTCGGTGCTACCACAGTCG
GCTTCGCGAAACCTATGCTTGAAGCTGCTTTGGATTCAACAGATCAAGTACTTACCCAAATGAATACAATTGAATATGAA
TTGAAAACTGCTATGTTTTGTACTGGCAGCCTGGTTCTTGATGATTTGAAGGAGAAGGCATGTCCATAG

Upstream 100 bases:

>100_bases
ATAAGATTTCAATTAAAACACTATGAAGAATAAAAACACAATAGTCTATTTGATGATTTCATGCTAAAATTGATGCTATT
TTTCAAAAGTAAATTCAGGC

Downstream 100 bases:

>100_bases
CTGCTAATGCCAGTGAATTATTTCGCGGATTCTCAAAATTATCACGTGAAGAGCGCTTTCAAAGATTATGCGCTTTAGGT
GCCTTGACTCATGAAGACAT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRFNKPVEKPFIISSMTAGHSNAIEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWEPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLHAEALIIHCNP
LQECIQPEGTTNFHGCWAALEALVKKINSPVIVKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRADKDPIR
HRTADTFRNWGIDTLQSTHNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTDQVLTQMNTIEYE
LKTAMFCTGSLVLDDLKEKACP

Sequences:

>Translated_342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRFNKPVEKPFIISSMTAGHSNAIEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWEPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLHAEALIIHCNP
LQECIQPEGTTNFHGCWAALEALVKKINSPVIVKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRADKDPIR
HRTADTFRNWGIDTLQSTHNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTDQVLTQMNTIEYE
LKTAMFCTGSLVLDDLKEKACP
>Mature_342_residues
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRFNKPVEKPFIISSMTAGHSNAIEI
NYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWEPLRRDFPMVSLFSNLGIAQLIDTPISAIQRLIDTLHAEALIIHCNP
LQECIQPEGTTNFHGCWAALEALVKKINSPVIVKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRADKDPIR
HRTADTFRNWGIDTLQSTHNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPMLEAALDSTDQVLTQMNTIEYE
LKTAMFCTGSLVLDDLKEKACP

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 37965; Mature: 37965

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRFNKP
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
VEKPFIISSMTAGHSNAIEINYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWEPLRRDF
CCCCEEEEEECCCCCCEEEEHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCCCCHHHCCC
PMVSLFSNLGIAQLIDTPISAIQRLIDTLHAEALIIHCNPLQECIQPEGTTNFHGCWAAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCHHHHHHHH
EALVKKINSPVIVKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRADKDPIR
HHHHHHCCCCEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
HRTADTFRNWGIDTLQSTHNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPML
HHHHHHHHHCCCHHHHHCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EAALDSTDQVLTQMNTIEYELKTAMFCTGSLVLDDLKEKACP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNEYSQFEQRKRDHIELALMPANQSSELNPFDHFSLVHEALPDLDFKDISIQSIRFNKP
CCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCC
VEKPFIISSMTAGHSNAIEINYRLMEACSKTKWAMGVGSQRRELTDKQAAFEWEPLRRDF
CCCCEEEEEECCCCCCEEEEHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCCCCHHHCCC
PMVSLFSNLGIAQLIDTPISAIQRLIDTLHAEALIIHCNPLQECIQPEGTTNFHGCWAAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCCHHHHHHHH
EALVKKINSPVIVKETGCGFSKNTLLRLNNIGVAAVDVSGVGGTHWGRIEGHRADKDPIR
HHHHHHCCCCEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
HRTADTFRNWGIDTLQSTHNAISLNPSFEIWGSGGVRNGLDAAKLFALGATTVGFAKPML
HHHHHHHHHCCCHHHHHCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EAALDSTDQVLTQMNTIEYELKTAMFCTGSLVLDDLKEKACP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA