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The map label for this gene is csiR [H]

Identifier: 54294865

GI number: 54294865

Start: 2182621

End: 2183325

Strand: Direct

Name: csiR [H]

Synonym: lpl1944

Alternate gene names: 54294865

Gene position: 2182621-2183325 (Clockwise)

Preceding gene: 54294864

Following gene: 54294866

Centisome position: 65.24

GC content: 36.45

Gene sequence:

>705_bases
ATGCGAAACATCATAAAACAATCCAAAACAAGTACAGTTTTGGAAAAAATAAGAATGGATTTAATTATCGGTTATTATAG
CCCCGGTCAAAAACTTCAAATGCAACAATTAAAAGAAAGATACAAGGTAGGTTATAGCCCTTTACGAGAAGCCTTATCCC
GTTTAGTTTCACAAGGATTAGTTCATCTTGAAGATCTCTGTGGATTTTCTGTACCCAATCTATCATTAGAGGAACTATAT
GATCTTTATTCCGTAAGAATTCTAATAGAAACAAAAGCTTTAGAGCTGTCTATACAACATGGCGATGAACATTGGGAAGC
AGAGGTTATTGCCTGTTGGTACAGGTATGCCAAATATCTTAACCTGGATACAAATCAACCCATCAACCCATTCGAATGGA
ATGAGTTTCAAAAAGAATTTACATTTACCCTGAGCAAAGCCTGTCAATCTCCCTGGCTGATCAAAATACAAGATATGTTA
TTTGACCATGCCTCACGCTATCGTTTTTTATGCCTGGGAAAACCTTTTCAGGATAAAAAAATTATCGATGAATTTCGTCA
GGAATGTGAAGAACTTGTCTCGGCAGTATTAGCCCGAGATAAAGAAAGAGCGCTGAAAATATCACAAGAAGGCTGGGAAA
ATTCTCTCGAAATCATGGCGAGCATTATAAAAAGCACAGGCATTGGGACATTAAAAAATGACTAA

Upstream 100 bases:

>100_bases
ATCACTTTTTTCAGACTTAAAATTTATTTTCGAATATTTACAAATTTTCGAAAATAATGAATACTTATCTCTTATTTAAC
CTGCAACGTTGAAAACCAAG

Downstream 100 bases:

>100_bases
TAGCAAAAAGTATTTACTTATCCCCTCAATCCCGACTCCCAATGGTCGCTTGCATTTAGGTCATATTGGCGGTCCTTTCT
TGAGTGCTGATATTTTAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRNIIKQSKTSTVLEKIRMDLIIGYYSPGQKLQMQQLKERYKVGYSPLREALSRLVSQGLVHLEDLCGFSVPNLSLEELY
DLYSVRILIETKALELSIQHGDEHWEAEVIACWYRYAKYLNLDTNQPINPFEWNEFQKEFTFTLSKACQSPWLIKIQDML
FDHASRYRFLCLGKPFQDKKIIDEFRQECEELVSAVLARDKERALKISQEGWENSLEIMASIIKSTGIGTLKND

Sequences:

>Translated_234_residues
MRNIIKQSKTSTVLEKIRMDLIIGYYSPGQKLQMQQLKERYKVGYSPLREALSRLVSQGLVHLEDLCGFSVPNLSLEELY
DLYSVRILIETKALELSIQHGDEHWEAEVIACWYRYAKYLNLDTNQPINPFEWNEFQKEFTFTLSKACQSPWLIKIQDML
FDHASRYRFLCLGKPFQDKKIIDEFRQECEELVSAVLARDKERALKISQEGWENSLEIMASIIKSTGIGTLKND
>Mature_234_residues
MRNIIKQSKTSTVLEKIRMDLIIGYYSPGQKLQMQQLKERYKVGYSPLREALSRLVSQGLVHLEDLCGFSVPNLSLEELY
DLYSVRILIETKALELSIQHGDEHWEAEVIACWYRYAKYLNLDTNQPINPFEWNEFQKEFTFTLSKACQSPWLIKIQDML
FDHASRYRFLCLGKPFQDKKIIDEFRQECEELVSAVLARDKERALKISQEGWENSLEIMASIIKSTGIGTLKND

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=188, Percent_Identity=34.0425531914894, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27353; Mature: 27353

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIIKQSKTSTVLEKIRMDLIIGYYSPGQKLQMQQLKERYKVGYSPLREALSRLVSQGL
CCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VHLEDLCGFSVPNLSLEELYDLYSVRILIETKALELSIQHGDEHWEAEVIACWYRYAKYL
HHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEHEEEEEECCCCCHHHHHHHHHHHHHHHHH
NLDTNQPINPFEWNEFQKEFTFTLSKACQSPWLIKIQDMLFDHASRYRFLCLGKPFQDKK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCEEEEECCCCCHHH
IIDEFRQECEELVSAVLARDKERALKISQEGWENSLEIMASIIKSTGIGTLKND
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRNIIKQSKTSTVLEKIRMDLIIGYYSPGQKLQMQQLKERYKVGYSPLREALSRLVSQGL
CCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VHLEDLCGFSVPNLSLEELYDLYSVRILIETKALELSIQHGDEHWEAEVIACWYRYAKYL
HHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEHEEEEEECCCCCHHHHHHHHHHHHHHHHH
NLDTNQPINPFEWNEFQKEFTFTLSKACQSPWLIKIQDMLFDHASRYRFLCLGKPFQDKK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCEEEEECCCCCHHH
IIDEFRQECEELVSAVLARDKERALKISQEGWENSLEIMASIIKSTGIGTLKND
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]