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The map label for this gene is yxjO [H]

Identifier: 54294683

GI number: 54294683

Start: 1962951

End: 1963859

Strand: Direct

Name: yxjO [H]

Synonym: lpl1760

Alternate gene names: 54294683

Gene position: 1962951-1963859 (Clockwise)

Preceding gene: 54294682

Following gene: 54294692

Centisome position: 58.67

GC content: 34.32

Gene sequence:

>909_bases
ATGAATATTGCCGATTTGCAATCTTTTCTTGCAATTGTAGAACTCCACTCTATCTCTTTAGCTGCCAAAAAATTGCATAT
TACTCAGCCTGCTTTAAGTAAAAGAATTAGAAAACTTGAGTCGGAATGGAATACCCAACTTTTTATTTCTTCAGGATTAA
GGACTGAGCTAACTGATAAAGGAAAACAATTATTGCCTTATGTTCGTCAGATGGTTTATCTGAGCCATGAGTTAATTAGC
AGCACTGGTACAGATAAAAAAAATCCTCAGTTACTGCTAAATATTGGTACCACAGTATATATTGCTCAAACTATTATTCC
CCCCCTTATAATCCATATGAACGCACTGGACTTGAACTATTTCATTAATACGAAACTCATTGCTGACAAAGATGTAGCTC
ACGGTTTAAGTGAAGGTGCTTATGATCTGATTATCTCCCCTTTCATGAGTAATTCTGCTGAAATTAAGTCTGTACCTTTG
TGGCGAGAAAAGCTCATCCCAATTGTCGGGTTATCACATCCTCTGGCAAAAATTAAAGAAAAACTATCCTTTGCTGAATT
AGCAGAATTTGATGCGGTGCTTATGGAAAAAAACTTTATAATACGCCGAATTATTGATAAAGAAGCTGAAAAACAAAAGT
TGACTCTCAAAATAAGAGCTGAAGCTAATATCATTTATAATAACATAGCTCTTGTCGAACAAGGTATGGCTTGGAGTATG
ATTAATGAACGCTTATTGAATCCTAATTTAAAACCTCTCGAACTATCTGATTATGTCCTCAGCATTGATTTTTATTGTCA
TTTTCTTCAGAAACGTACAGATGAACGATTGATTCGTATTTTTATTGATAATCTGGTTAATTGGGTTAACACGTCAAGTG
AATTAAGCTCTTTTTCCCTTGTTAATTAG

Upstream 100 bases:

>100_bases
TTCGTTTTTATACGTTATAACGCCCGGTTATAGGCTTTTGTATAATGATAAAAACTATCCTAGTATTAATTTAAGTAATA
TTATGATTGGTTTTAAAATA

Downstream 100 bases:

>100_bases
ATAAACTCTTTATTGCCAGGTTGCAAGAAACCTCTCAGGCTGCACTTAGCCCAAGAGATATCAATTAAAAACTATTGATT
TAAGTCAGCTTTGCACTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNIADLQSFLAIVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVRQMVYLSHELIS
STGTDKKNPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLIADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPL
WREKLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSM
INERLLNPNLKPLELSDYVLSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLVN

Sequences:

>Translated_302_residues
MNIADLQSFLAIVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVRQMVYLSHELIS
STGTDKKNPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLIADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPL
WREKLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSM
INERLLNPNLKPLELSDYVLSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLVN
>Mature_302_residues
MNIADLQSFLAIVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVRQMVYLSHELIS
STGTDKKNPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLIADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPL
WREKLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSM
INERLLNPNLKPLELSDYVLSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLVN

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=28.3261802575107, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=25.6198347107438, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790399, Length=211, Percent_Identity=27.0142180094787, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=166, Percent_Identity=28.3132530120482, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34444; Mature: 34444

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIADLQSFLAIVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHC
GKQLLPYVRQMVYLSHELISSTGTDKKNPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEEEEEE
FINTKLIADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWREKLIPIVGLSHPLAKIKE
EEEEEEEECHHHHHHHCCCCHHHEEEHHHCCCCCCCCCCCHHHHCCCHHCCCCHHHHHHH
KLSFAELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEHHHHHHHCCCHHHH
INERLLNPNLKPLELSDYVLSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSL
HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
VN
CC
>Mature Secondary Structure
MNIADLQSFLAIVELHSISLAAKKLHITQPALSKRIRKLESEWNTQLFISSGLRTELTDK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHC
GKQLLPYVRQMVYLSHELISSTGTDKKNPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHEEEEEEEEE
FINTKLIADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWREKLIPIVGLSHPLAKIKE
EEEEEEEECHHHHHHHCCCCHHHEEEHHHCCCCCCCCCCCHHHHCCCHHCCCCHHHHHHH
KLSFAELAEFDAVLMEKNFIIRRIIDKEAEKQKLTLKIRAEANIIYNNIALVEQGMAWSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEHHHHHHHCCCHHHH
INERLLNPNLKPLELSDYVLSIDFYCHFLQKRTDERLIRIFIDNLVNWVNTSSELSSFSL
HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
VN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]