Click here to switch to the map view.

The map label for this gene is 54294682

Identifier: 54294682

GI number: 54294682

Start: 1962110

End: 1962832

Strand: Direct

Name: 54294682

Synonym: lpl1759

Alternate gene names: NA

Gene position: 1962110-1962832 (Clockwise)

Preceding gene: 54294681

Following gene: 54294683

Centisome position: 58.65

GC content: 36.93

Gene sequence:

>723_bases
ATGATGCAGAGGAAATGGGTTGTCTTAGGAGCTACTTCAGTTATTGCCGAACAATTCGCACATCTTGCTGCGCAAGCCGG
TAACCATTTATGTTTGGTTGCACGCAATTCGGAACAATTAGCCTTAATCTCAAAAGATATTCAATTGCGATATAAAATCC
CTTGTGACGCGATAACTATCAATTTATCCGAACCTAACGAGCAATTGCTTACCATTTTAGAAACCAGAGAAAGAGAATTG
GATTTATTTATTGCGCATTGTGATTTTACCGATAATAACCATTTAAATCCGCAATCGATTAAACATTTAATTGATACCAA
TATCTCATCTACAGCGATCCTGATTAATACCTATTTACAATCACAACAAGAAAGACATCGTATCGTTTATTTAAGCTCTG
TTGCTTCCTGCCGCGGCCGTGCCAAAAATAGTCTTTATGGGGCCAGTAAAGCAGCAATTGAGATATTTCTCGAAGGCCTG
CAACAAAAAGCAACTCCACATCAACATATCTTAATCGCTCGCCTTGGATACATTGATACAAAACAAACGTATGGACTACC
CGGAGTTTTTTACGCAGCTCAACCTCATGACTGTGCAAAGGCGTGTTGGGAAAAAATAAATCATAATAAAAGATTATTTT
ACTATCCTTCTTTCTGGAGAGTAGTCATGGCTATTATTACAAAACTCCCTTTTTTCATTTATAAAAGAATGGGAAAAATA
TAA

Upstream 100 bases:

>100_bases
ATTTTACAATGTACGAAAACCAATCGAAATTTGCTCAAATACTTACAAAATATCGATGCCCCATGCGTTCAGATCTTGCG
ACACGTTTAGGAATCATAAA

Downstream 100 bases:

>100_bases
GTATTATTATCGCAATGATTCGTTTTTATACGTTATAACGCCCGGTTATAGGCTTTTGTATAATGATAAAAACTATCCTA
GTATTAATTTAAGTAATATT

Product: hypothetical protein

Products: NA

Alternate protein names: Short Chain Dehydrogenase; Short-Chain Dehydrogenase; Oxidoreductase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family; 3-Oxoacyl-[Acyl-Carrier Protein] Reductase Paralog; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; 3-Oxoacyl-(Acyl-Carrier Protein) Reductase Paralog

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MMQRKWVVLGATSVIAEQFAHLAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCDAITINLSEPNEQLLTILETREREL
DLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQERHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGL
QQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWRVVMAIITKLPFFIYKRMGKI

Sequences:

>Translated_240_residues
MMQRKWVVLGATSVIAEQFAHLAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCDAITINLSEPNEQLLTILETREREL
DLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQERHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGL
QQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWRVVMAIITKLPFFIYKRMGKI
>Mature_240_residues
MMQRKWVVLGATSVIAEQFAHLAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCDAITINLSEPNEQLLTILETREREL
DLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQERHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGL
QQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWRVVMAIITKLPFFIYKRMGKI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI226371731, Length=169, Percent_Identity=28.4023668639053, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27413; Mature: 27413

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQRKWVVLGATSVIAEQFAHLAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCDAITI
CCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCEEEEEECCCCEEEE
NLSEPNEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQ
EECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
SQQERHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGLQQKATPHQHILIARLGYIDT
HHHHCCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCC
KQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWRVVMAIITKLPFFIYKRMGKI
CCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMQRKWVVLGATSVIAEQFAHLAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCDAITI
CCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCEEEEEECCCCEEEE
NLSEPNEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQ
EECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
SQQERHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGLQQKATPHQHILIARLGYIDT
HHHHCCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCC
KQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWRVVMAIITKLPFFIYKRMGKI
CCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA