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The map label for this gene is yacF [C]

Identifier: 54294493

GI number: 54294493

Start: 1740326

End: 1741072

Strand: Direct

Name: yacF [C]

Synonym: lpl1562

Alternate gene names: 54294493

Gene position: 1740326-1741072 (Clockwise)

Preceding gene: 54294492

Following gene: 54294501

Centisome position: 52.02

GC content: 32.8

Gene sequence:

>747_bases
ATGCATGACCATATGATAACGTTTCAACTAGCAACTCATTTTTTATCAAGAATTGCCTTGCGCCTGGAGTACCTTTTTAA
AACCATTAATGAAGCTTGTAATGAGTCTCATGAGGTTATTCATCGATTTGCATTAAAGAATATAATTGAGATTGCTGAAA
TAGTTGAAAAGCCGGAATTAAAAAGCAGATTTATCAAAGAGTTAATTAGAATTGAGCATGTACTTAAAAAAGCCAATCTA
TTGAATCATAGTGAGTTATTTGATGATCTGGAAACACAAATTCATGTGTTAAATCATGTACCAGGTCGATTTAGTAACAA
AATCCATGATGATGAATTTTTAAAAACTTTAAGACAAATACACCACCCCAATACTAAAGAATGCGAATTTAATTCCCCTC
ATTTGGTATTGTGGTTTGATTCAGATCCCCTAATGAGGCAAAAAACAATTAGTCAGTGGGTATCATGCCTGAGGGATCTG
GAAGATACTGTAAAAATTTATTTGTCATTGTTACGAGGTGTTACTCAGTATACTCCCATTAGAGCAAATAATGGATTCTA
TCAGCATAGTCTTTCACCTAAATCACTTAACCATCTGATCTTGTTAAGAATAGATAAGAAATTGAAAATGATACCCAAAA
TCCAGTTAGGGCATCATAGTTTAACTATCAGGCTTTATGAGCTTGTCACTGGTCAAGAAATCAGAGATAAAACAATAGAA
ATGGAAATTGCATTTTGCCAAATATAG

Upstream 100 bases:

>100_bases
TGTTTTTAAATAAACCCAGGAGCCCATTTTTACCTAATGTGCATCTATAAAAATTTAAATTGCCATTATTATAGGATAAA
GCTAAGGATGGCCTTAATCT

Downstream 100 bases:

>100_bases
ACGCCCTGGCACTATGCTGGCTTTGCGTTAAAGTGAGTCCGCATTAATTAAATTGTATAGTAATTCCTCCGCCATAATAA
CGCTCAACACCATCCAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIAEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLRDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI

Sequences:

>Translated_248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIAEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLRDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI
>Mature_248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIAEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLRDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family [H]

Homologues:

Organism=Escherichia coli, GI1786291, Length=241, Percent_Identity=25.3112033195021, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009777 [H]

Pfam domain/function: PF07072 DUF1342 [H]

EC number: NA

Molecular weight: Translated: 29311; Mature: 29311

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIAEIVEKPEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCH
KSRFIKELIRIEHVLKKANLLNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHH
HHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLRDLEDTVKIYLSLLRGVTQYTPI
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
ECCCCCEECCCCHHHHCCEEEEEECCHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHE
MEIAFCQI
EEEEEECC
>Mature Secondary Structure
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIAEIVEKPEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCH
KSRFIKELIRIEHVLKKANLLNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHH
HHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLRDLEDTVKIYLSLLRGVTQYTPI
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
ECCCCCEECCCCHHHHCCEEEEEECCHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHE
MEIAFCQI
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]