Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 54294426

GI number: 54294426

Start: 1664533

End: 1665318

Strand: Direct

Name: yddE [C]

Synonym: lpl1495

Alternate gene names: 54294426

Gene position: 1664533-1665318 (Clockwise)

Preceding gene: 54294425

Following gene: 54294427

Centisome position: 49.75

GC content: 37.91

Gene sequence:

>786_bases
GTGCAGAATATTGAGTTTTATCAAATAGATGCTTTTACGGACAAAGTCTTCCATGGTAATCCGGCTGCGGTTTGTATTCT
CGATGATTGGTTAAATGATGAGCTATTAAAAACCATTGCTGCACAAAATAATTTGGCAGAAACTGCTTTTATTATAAAGG
ATGATCAAGATTTTCATATTCGTTGGTTTACTCCTAATGGGGAAATCAATCTATCAGGACATGCAACTTTGGCAGCAGGG
TTTGCTTTACTTGAGTCAAATAAAGGACCTAGTGATTCTATTATTTTTCACCACTCCAGTGGACAGATTTCGGTAGAAAA
GAGAAAGGAAAAGTTTGTTCTGAATTTTCCAAGAATAGGTTATAAGAAAACTCCTTCACCAGACCCAATTGTATCACTAT
TGGATCAACCTGCTATAGAAGTATTTGAAACAGACCTTGATTATCTGGTTTTACTTGAACATGAGTCACAGATTCGAAAT
TTGCAAATCGATTTGCTTGCTTTAGCACAACTCCCAAAAAGAGGAATCATTGTGACCTCAACAACAACGGAAGCCGACTT
CTATTCCCGATGTTTTTATCCAAAACACAGCATTGCAGAAGATCCTGTTACCGGCTCAGCACATTGCATATTAGCTCCTT
TTTGGGCAGAAAAACTCAATAAAAGCAGCCTATATGCTATCCAGGGATTACACAGAAAAGGGGAGTTATATTGTGAGCTC
CAGAGGAATAGGGTATTGATTTCCGGTCATTGTCGATGGTATCTACGCGGGCATTTAGTAATTTAA

Upstream 100 bases:

>100_bases
ATACAGGGACCATAAGAGATATATTGAAGATATATTGATAATTCGACTTAACTTCATCTTTCTTTATCAGTTATAATTTT
AATTTTTATGTGAGCTGATT

Downstream 100 bases:

>100_bases
TAAAATCGATTGAGATGCATTCATCATTGAAGCATAATATAAAACCCATTTAGGAACCAATGGAGCATGATAACAATATC
TATTCCAAAAGGAATTCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKTIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAQLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKSSLYAIQGLHRKGELYCEL
QRNRVLISGHCRWYLRGHLVI

Sequences:

>Translated_261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKTIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAQLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKSSLYAIQGLHRKGELYCEL
QRNRVLISGHCRWYLRGHLVI
>Mature_261_residues
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKTIAAQNNLAETAFIIKDDQDFHIRWFTPNGEINLSGHATLAAG
FALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIGYKKTPSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRN
LQIDLLALAQLPKRGIIVTSTTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKSSLYAIQGLHRKGELYCEL
QRNRVLISGHCRWYLRGHLVI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=281, Percent_Identity=36.2989323843416, Blast_Score=144, Evalue=7e-35,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=34.9206349206349, Blast_Score=129, Evalue=4e-30,
Organism=Escherichia coli, GI1787737, Length=233, Percent_Identity=29.1845493562232, Blast_Score=75, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17542160, Length=309, Percent_Identity=32.6860841423948, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=309, Percent_Identity=32.6860841423948, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=30.5194805194805, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=30.5194805194805, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321818, Length=284, Percent_Identity=27.4647887323944, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29593; Mature: 29593

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKTIAAQNNLAETAFIIKDDQDFHI
CCCCEEEEEECEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
RWFTPNGEINLSGHATLAAGFALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIG
EEECCCCEEEECCCHHHHHHEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
YKKTPSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLLALAQLPKRGIIVTS
CCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCHHCEEEEEEEHHCCCCCCEEEEE
TTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKSSLYAIQGLHRKGELYCEL
CCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEECCCCCCCEEEEE
QRNRVLISGHCRWYLRGHLVI
ECCEEEEECCEEEEEEEEEEC
>Mature Secondary Structure
MQNIEFYQIDAFTDKVFHGNPAAVCILDDWLNDELLKTIAAQNNLAETAFIIKDDQDFHI
CCCCEEEEEECEECEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEE
RWFTPNGEINLSGHATLAAGFALLESNKGPSDSIIFHHSSGQISVEKRKEKFVLNFPRIG
EEECCCCEEEECCCHHHHHHEEEEECCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCC
YKKTPSPDPIVSLLDQPAIEVFETDLDYLVLLEHESQIRNLQIDLLALAQLPKRGIIVTS
CCCCCCCCHHHHHHCCCCCEEECCCCCEEEEEECCCCHHCEEEEEEEHHCCCCCCEEEEE
TTTEADFYSRCFYPKHSIAEDPVTGSAHCILAPFWAEKLNKSSLYAIQGLHRKGELYCEL
CCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEEEEECCCCCCCEEEEE
QRNRVLISGHCRWYLRGHLVI
ECCEEEEECCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]