Click here to switch to the map view.

The map label for this gene is 54294386

Identifier: 54294386

GI number: 54294386

Start: 1622272

End: 1623111

Strand: Direct

Name: 54294386

Synonym: lpl1455

Alternate gene names: NA

Gene position: 1622272-1623111 (Clockwise)

Preceding gene: 54294385

Following gene: 54294393

Centisome position: 48.49

GC content: 35.83

Gene sequence:

>840_bases
ATGATAAGAAGCATATTGGTATTGTTTTTTTTATTTATTGCTAATGCTGGTTATGGATGGAACGCGATAGGGCACCAACT
GGTAGCCCAGATCGCATATGATAATTTGACACCTCAATCCAGGCGAATGTGTGATTTATATTCCCATTCAAAATCGAAAT
CGAAGACGTCGTCTAATGTTAATTTTGTAAAATCAGCTTCATGGCTGGACTCCATAAGAGCACATGATGTTCATTGGTTT
GATGCTTTACATTACATTGACATTCCATTTTCTATGGATGAGACAGAACTACCAGTTTTGACAGACATCAATGCACTCTG
GGGAATTAATCAGGCAATTGCTGTGATGTCTTCCAATAAAGCCAGTATTGCTGATAAAAAATTGAGCTTACGCATATTGG
TGCATTTGGTTGGAGATATTCATCAGCCTTTGCATACCGTTACAAAGATAAGTAAAAAATTACCTAAAGGTGATTTAGGT
GGTAATTTATTTCAGTTAGCTAAAAATCCTATTGGGAATAATTTGCATCAATATTGGGATAATGGTGGCGGTATTCTGGT
TGGTCAAGACAAATTTTTTCAGATTAAAAACAAAGCGAGGCAATTGGAGAAGAAATGGTCTTGTCAATCAGCCAGTAAGG
AAAAAAATCCGCAACAATGGATTAATGCATCACATCAATTGGCATTGACTAAAGTTTATAAGGTTTCAGCTCGTCAGGTA
CCTGGCAAGCAATATCAGTTAAATACTCAAAATATTACAGAAAAACAGATACTTCTGGCTGGGTGTCGACTCGCTTATCT
GTTAAATAATATTGCCGAAGGTAAAAATAAACTTATTTAA

Upstream 100 bases:

>100_bases
TTTTAGGCATTGTGTCAATTGATGGGAGAATTAGAATGAGACTTCCTGCTCGTGAAGGAGATGTTCAAGAGCCGGCTTGG
TCCCCTTACCTGAGTTAAGA

Downstream 100 bases:

>100_bases
TCTCAGCTTCCTTTTTAGGAGGGGTGAATTATTGGGGAATGCCTTTATTGTAATTGGCAGTTACTCCCTTTAAACCATTT
TCTATATATTTAACAGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Endonuclease; Phospholipase C/P1 Nuclease Domain-Containing Protein; 3-Nucleotidase/Nuclease; S1/P1 Endonuclease Family Protein; Phospholipase C/P1 Nuclease Family Protein

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIRSILVLFFLFIANAGYGWNAIGHQLVAQIAYDNLTPQSRRMCDLYSHSKSKSKTSSNVNFVKSASWLDSIRAHDVHWF
DALHYIDIPFSMDETELPVLTDINALWGINQAIAVMSSNKASIADKKLSLRILVHLVGDIHQPLHTVTKISKKLPKGDLG
GNLFQLAKNPIGNNLHQYWDNGGGILVGQDKFFQIKNKARQLEKKWSCQSASKEKNPQQWINASHQLALTKVYKVSARQV
PGKQYQLNTQNITEKQILLAGCRLAYLLNNIAEGKNKLI

Sequences:

>Translated_279_residues
MIRSILVLFFLFIANAGYGWNAIGHQLVAQIAYDNLTPQSRRMCDLYSHSKSKSKTSSNVNFVKSASWLDSIRAHDVHWF
DALHYIDIPFSMDETELPVLTDINALWGINQAIAVMSSNKASIADKKLSLRILVHLVGDIHQPLHTVTKISKKLPKGDLG
GNLFQLAKNPIGNNLHQYWDNGGGILVGQDKFFQIKNKARQLEKKWSCQSASKEKNPQQWINASHQLALTKVYKVSARQV
PGKQYQLNTQNITEKQILLAGCRLAYLLNNIAEGKNKLI
>Mature_279_residues
MIRSILVLFFLFIANAGYGWNAIGHQLVAQIAYDNLTPQSRRMCDLYSHSKSKSKTSSNVNFVKSASWLDSIRAHDVHWF
DALHYIDIPFSMDETELPVLTDINALWGINQAIAVMSSNKASIADKKLSLRILVHLVGDIHQPLHTVTKISKKLPKGDLG
GNLFQLAKNPIGNNLHQYWDNGGGILVGQDKFFQIKNKARQLEKKWSCQSASKEKNPQQWINASHQLALTKVYKVSARQV
PGKQYQLNTQNITEKQILLAGCRLAYLLNNIAEGKNKLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31404; Mature: 31404

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA