Click here to switch to the map view.

The map label for this gene is 54294338

Identifier: 54294338

GI number: 54294338

Start: 1568964

End: 1569839

Strand: Reverse

Name: 54294338

Synonym: lpl1406

Alternate gene names: NA

Gene position: 1569839-1568964 (Counterclockwise)

Preceding gene: 54294348

Following gene: 54294331

Centisome position: 46.92

GC content: 35.84

Gene sequence:

>876_bases
ATGGACAAGAGCCCAAAATTAATGCATCTTCTGGTTTATGCGGTTCACCTGGTATTAGTCTCAACATGTTGTTTTGGAGA
ACCCAATTCACCAGAAAAACTACTTAAAATTACTATTGCCAATAAAACATATACCCTGTCGGAGCTAAAAAAACAATTTA
AAACCATTCGTGTGATTATCTCACATAATCCTGCATATAATTTTCAGAAAAAAACATACGATGCGTTTGACATCAATCAG
ATTTTAGAACAATTGATGGGAGCAGATTTACAAAAAAATAATGCTGACCAGGTATTATTAGCTCAAACACTAGATAAATA
TGTGTCTCAAACTCCCTTGTTGCATTTTACGACAAAGGGGCATGCCTATCTTGCTTATCAAGAGACGCCCGGAACAATCT
CTGACAATAATATCACCAAAGACGGTCGTTGGAGTTACATTAATCAACACGGTAAAAAAGAAAATCCTGGTCCTTTCTAT
ATTGTATGGGATAATACAAATACCTACCCTGTGAGTTGTCCATACCAGGTTATTTCGATGCAAATAGTAAATAAGAAAGA
GCTGACTTTTTCTCATTTTTTAAATCCATTGAATGAATCAGCTTCTGTGCAAAATGGTCATCATATTTTTAATAATATAT
GCTCCACATGCCACTCTCTTTTTTACAAGGGGGCTCAAGGGCGCGCACCAGACTTAGGCATGGTGACGAGTTATTTAACG
CCTTCAGATATCAGTAAACTTGTAAAGAATGGACGAGGATACATGCCACCGATAGGCAAAAACCTCTCTACGGAAGAAAT
TAATGATCTTATTAAATTTTTAATCTGGGTTAATAAACAAGCTTCCAAACTAAAATGCGAAATTAACAACCAGTGA

Upstream 100 bases:

>100_bases
CGCTGGGAAATATCACTTGGAAGCGCTCCTGTTATAAACCATAATAGCTAGTAAGACTATGGGAAAAATCTGATTTGTTT
TCAATAAACAAGAAGGACTT

Downstream 100 bases:

>100_bases
TTATAATTCAGAGAATTAGATAGCCGGATCAGAAAACACTGAACCGGCCATCTTTTGGATTATTTCTCCAGCTCATTAAT
CAGGTTAAACAATTGAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MDKSPKLMHLLVYAVHLVLVSTCCFGEPNSPEKLLKITIANKTYTLSELKKQFKTIRVIISHNPAYNFQKKTYDAFDINQ
ILEQLMGADLQKNNADQVLLAQTLDKYVSQTPLLHFTTKGHAYLAYQETPGTISDNNITKDGRWSYINQHGKKENPGPFY
IVWDNTNTYPVSCPYQVISMQIVNKKELTFSHFLNPLNESASVQNGHHIFNNICSTCHSLFYKGAQGRAPDLGMVTSYLT
PSDISKLVKNGRGYMPPIGKNLSTEEINDLIKFLIWVNKQASKLKCEINNQ

Sequences:

>Translated_291_residues
MDKSPKLMHLLVYAVHLVLVSTCCFGEPNSPEKLLKITIANKTYTLSELKKQFKTIRVIISHNPAYNFQKKTYDAFDINQ
ILEQLMGADLQKNNADQVLLAQTLDKYVSQTPLLHFTTKGHAYLAYQETPGTISDNNITKDGRWSYINQHGKKENPGPFY
IVWDNTNTYPVSCPYQVISMQIVNKKELTFSHFLNPLNESASVQNGHHIFNNICSTCHSLFYKGAQGRAPDLGMVTSYLT
PSDISKLVKNGRGYMPPIGKNLSTEEINDLIKFLIWVNKQASKLKCEINNQ
>Mature_291_residues
MDKSPKLMHLLVYAVHLVLVSTCCFGEPNSPEKLLKITIANKTYTLSELKKQFKTIRVIISHNPAYNFQKKTYDAFDINQ
ILEQLMGADLQKNNADQVLLAQTLDKYVSQTPLLHFTTKGHAYLAYQETPGTISDNNITKDGRWSYINQHGKKENPGPFY
IVWDNTNTYPVSCPYQVISMQIVNKKELTFSHFLNPLNESASVQNGHHIFNNICSTCHSLFYKGAQGRAPDLGMVTSYLT
PSDISKLVKNGRGYMPPIGKNLSTEEINDLIKFLIWVNKQASKLKCEINNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33007; Mature: 33007

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSPKLMHLLVYAVHLVLVSTCCFGEPNSPEKLLKITIANKTYTLSELKKQFKTIRVII
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHEEEEE
SHNPAYNFQKKTYDAFDINQILEQLMGADLQKNNADQVLLAQTLDKYVSQTPLLHFTTKG
ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
HAYLAYQETPGTISDNNITKDGRWSYINQHGKKENPGPFYIVWDNTNTYPVSCPYQVISM
CEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEECCCCHHHEEE
QIVNKKELTFSHFLNPLNESASVQNGHHIFNNICSTCHSLFYKGAQGRAPDLGMVTSYLT
HHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
PSDISKLVKNGRGYMPPIGKNLSTEEINDLIKFLIWVNKQASKLKCEINNQ
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
>Mature Secondary Structure
MDKSPKLMHLLVYAVHLVLVSTCCFGEPNSPEKLLKITIANKTYTLSELKKQFKTIRVII
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEHHHHHHHHHHEEEEE
SHNPAYNFQKKTYDAFDINQILEQLMGADLQKNNADQVLLAQTLDKYVSQTPLLHFTTKG
ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC
HAYLAYQETPGTISDNNITKDGRWSYINQHGKKENPGPFYIVWDNTNTYPVSCPYQVISM
CEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCEECCCCHHHEEE
QIVNKKELTFSHFLNPLNESASVQNGHHIFNNICSTCHSLFYKGAQGRAPDLGMVTSYLT
HHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCC
PSDISKLVKNGRGYMPPIGKNLSTEEINDLIKFLIWVNKQASKLKCEINNQ
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA