Click here to switch to the map view.

The map label for this gene is dnaQ [H]

Identifier: 54294270

GI number: 54294270

Start: 1493361

End: 1494062

Strand: Direct

Name: dnaQ [H]

Synonym: lpl1335

Alternate gene names: 54294270

Gene position: 1493361-1494062 (Clockwise)

Preceding gene: 54294269

Following gene: 54294272

Centisome position: 44.64

GC content: 33.76

Gene sequence:

>702_bases
ATGAGACAAGTTATATTAGATACTGAAACGACTGGTATTGGACCTGAACAGGGACATAGAGTAATTGAAATAGGTTGTAT
TGAGCTCATTGATAGAAAATTAACCGGCAAGCACTTCCATATATACCTTAATCCACAGCGTGAAGTGGATGAAGGGGCAT
TTAGAGTTCACGGTATAAGTACTGAATTTTTGCAAGATAAACCTTTATTCCAGGATATTGTGACTGAATTTATACAATTT
GTGGAAGGTTCAGAATTAATTATTCACAATGCTCCATTTGATGTTGGATTTCTGAATTCTGAATTAAAACATGTGAAATG
GAATAAGACATTAGAAGATTATTGCCGGATTCTTGATACTTTGATTTTAGCCAGAGAAAAACATCCTGGACAGCGTAATA
GTTTGGATGCTTTGTGTAAACGTTATGAAATAGATCATTTTAATCGTGAACTGCACGGAGCTTTGCTTGATGCCGAAATA
TTAGCTTATGTTTATTTGGCAATGACAGGTGGCCAAAGCAGTTTATTTACTGAGGTTGAATCCAGTTTTAGTCAATCAAA
AATAAAAACTCAAGAGATAAAGTCATTAAGTTTAAAAAAACCGGTAATAATGAAGGCTAATGAAGAGGAATTAATGCAAC
ATCAAAGTTTCGTTGAATTTATATCTAAAAAATCCGGTATCAATCATTGGGAAGAGGTATAG

Upstream 100 bases:

>100_bases
AATATTAATTGGCATTGGGTTAAAGGGCACTCAGGTCATTTGGAAAATGATTTGGTTGATGCTTTGGCAAATTTGGGTAT
TGAGGAATTATCATAGAGTT

Downstream 100 bases:

>100_bases
CTCTCATGATTATATAAACTATAAATAATTATTCTGTTACGCTTATTATTCGGTTTCGCGTCTGCCAATACTAAACTTTA
TACAATAACAAAATTCTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQF
VEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEI
LAYVYLAMTGGQSSLFTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSGINHWEEV

Sequences:

>Translated_233_residues
MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQF
VEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEI
LAYVYLAMTGGQSSLFTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSGINHWEEV
>Mature_233_residues
MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFLQDKPLFQDIVTEFIQF
VEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEI
LAYVYLAMTGGQSSLFTEVESSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSGINHWEEV

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=236, Percent_Identity=48.728813559322, Blast_Score=231, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 26840; Mature: 26840

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIS
CCEEEEECCCCCCCHHHCCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCC
TEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDT
HHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHH
LILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
SSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSGINHWEEV
HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure
MRQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIS
CCEEEEECCCCCCCHHHCCEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCC
TEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDT
HHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHH
LILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVE
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
SSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSGINHWEEV
HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]