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The map label for this gene is fis [H]

Identifier: 54294256

GI number: 54294256

Start: 1478364

End: 1478660

Strand: Reverse

Name: fis [H]

Synonym: lpl1321

Alternate gene names: 54294256

Gene position: 1478660-1478364 (Counterclockwise)

Preceding gene: 54294257

Following gene: 54294249

Centisome position: 44.2

GC content: 35.69

Gene sequence:

>297_bases
ATGAATGTCATTGATACACAAGCTACAACTCAATCCACTAAACAAGAACAAGGTTTACAGGATTTAGTTTACAGTTTGGT
TACCCGCTTTCTTGCTGAAAATAAATCCAAATCAATTAATGATCTCTATGATATGATCCTGTCAGAAGTTGAGCCACCTC
TATTACAAGCTGTAATGGAAAAACGTCGTGGAAATCAATTACAAGCAGCCAAGATGTTGGGTATTAGTCGCGGTACGATC
AGAAAGAAATTACAAAGATATTTCGGTACCAAATATTTTCGCTTAACTGAAGAGTAA

Upstream 100 bases:

>100_bases
CTAGATTATCATTTAGCCTTCATGTACAATTAATTTTGCTTTCATTTACATGTGTAAGCAATTGGACTGTATGATTTAAT
TAAATAATAAGGAAGTTAAG

Downstream 100 bases:

>100_bases
GGGAAATTTAAAAATAAAAAGGCTCATTTTTGAGCCTTTTTATTTTATGTTCAGCTCATCCCGGATAATGATTTGTTCTA
ATCCGGGATTGCTTGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKRRGNQLQAAKMLGISRGTI
RKKLQRYFGTKYFRLTEE

Sequences:

>Translated_98_residues
MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKRRGNQLQAAKMLGISRGTI
RKKLQRYFGTKYFRLTEE
>Mature_98_residues
MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVMEKRRGNQLQAAKMLGISRGTI
RKKLQRYFGTKYFRLTEE

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=84, Percent_Identity=45.2380952380952, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 11315; Mature: 11315

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVME
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
KRRGNQLQAAKMLGISRGTIRKKLQRYFGTKYFRLTEE
HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHEECCC
>Mature Secondary Structure
MNVIDTQATTQSTKQEQGLQDLVYSLVTRFLAENKSKSINDLYDMILSEVEPPLLQAVME
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHH
KRRGNQLQAAKMLGISRGTIRKKLQRYFGTKYFRLTEE
HHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA