Click here to switch to the map view.

The map label for this gene is 54294254

Identifier: 54294254

GI number: 54294254

Start: 1474599

End: 1476176

Strand: Direct

Name: 54294254

Synonym: lpl1319

Alternate gene names: NA

Gene position: 1474599-1476176 (Clockwise)

Preceding gene: 54294253

Following gene: 54294255

Centisome position: 44.07

GC content: 38.09

Gene sequence:

>1578_bases
ATGAAAGCAAGAAGGAGTAACGAACTTTCCAAATTGCGAATGAGATTTTTTTCAGCGCTTAATCATACATCTGAAATTGA
CTTGCATACACTCTTTGATAACCTGAAATCAAATCTTACACTTGGAAGCATCGAGCATCTCCAGGAAGGCTCTGTTACGT
ATGCAATCATTCAAGAACTCTTGAAAGGGGCGGATGCTCAAAAAAAGATTGAATCTTTTTTAAAAGGGGCAATCAAGAAT
GTTATTCACCCAGGTGTTATTAAAGGGCTTACCCCTAATGAAATCAATTGGAATGTTGCCAAAGCATACCCGGAATATTA
CGAGCATGAGAAACTGCCTGATGTGACTTTTGGTGGCTTTAAAGTACGTGATAGTAATGAATTTAAATTTAAGACGAACG
TACAAACCTCAATATGGTTCAGCATCAAACCTGAACTTTTTATGCCTTCTAAACAACAGGAAGCGTTAAAAAGAAGGAGG
GAACAATACCCCGGTTGTAAAATTAGATTAATTTATTCTAGTTCATTACTAAATCCAGAAGCAAACCGACAAATGAAGGC
ATTTGCCAAGAAACAAAATATTTCATTAATTGATATCGATAGTGTTAAAACCGACTCACCACTCTATCCATTGATAAAAG
CTGAACTCGCTAACCTGGGAATGGGCGGAAATCCCGCTGCCGCCTCCGATTTGTGTCGCTGGATCCCTGAGTTATTCAAT
GAAGGATTTTATGTAGATATTGATCTCCCTGTTGATAGTTCAAAAATAGTAGAAGGACATCAAATTACAGGAGGAGTTCC
AATTATGCTCAATATGGGCTCCATTATAAGTGAACCCATAGCACCTCATCATCGAAGGCAAGAAGCAGTTTGTATGAATA
CAGATATTATTGCTTATGCAAATGATCGTGAAACGCAAGTTATGATGGATACGGTTGCCCTCCATTTAAAAAATATATAC
GATGACCCTTATACTGCATTAAAAGACACGCCACTCGCGCAAACGGCTTTTTTTAATAGATGCGAAGAGGAAGGGAAAAA
TATATTTGAGTTAAGAAAAGGATTACAAGATGCTTTTAGATCCGATTCTTTATTGGAGTTATATGTTTTTTTAGGGCCTG
CAAAATTTAAAGAAGTATTTAAATTAAAAGAAACTCAAATCAAATATATTGACGATCACATTAGTGAATTTAATGAGCAT
GATCTCTTGTTACACTTAATATCTGATAATCCTTCTGAAATTAATCAACATACTCTTGATTTTGGCCGAGCTAAAGTGAT
GTATATGGATATTGCTAAAGAGCACTATTCTGCATTCTACAAACCATTGGTAGAAGAGATTTCAGGCCCAGGTGCCATTT
ATAATGCTTTAGGCGGAGCGAGCAACTTCACTACCACTCATAGGCGGTCAACGGGACCTATGTTGCCAACAACCCCACCA
CGTGTTTTACAGGTGTTTTGTGATGCGCATGACAAGGGTCCTTTTGTTTCAGATAATATTGCTCGTTGGCAAACCAATGT
CCGAGAGCTGGGCGTGTTGAATCGAGAGGGTTTGAGTTGGTTGCCTTCAGTAGGGTAG

Upstream 100 bases:

>100_bases
TTATAAATATCCCTATATCGATTATCTACTATACTTATTCAATACGAAAATATAAATCATTATTGTTAAGAACGGTCAAC
TTGCATGGGAGACAGATATT

Downstream 100 bases:

>100_bases
CTTAATTTCAACACGCAAATTTTGAATATTGTCTCAAGCATTAGCAATATAAATAATCACCAATAGATAAAAGACTTTAT
TGGTGATTGGTGTTTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MKARRSNELSKLRMRFFSALNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQELLKGADAQKKIESFLKGAIKN
VIHPGVIKGLTPNEINWNVAKAYPEYYEHEKLPDVTFGGFKVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRR
EQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSVKTDSPLYPLIKAELANLGMGGNPAAASDLCRWIPELFN
EGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSIISEPIAPHHRRQEAVCMNTDIIAYANDRETQVMMDTVALHLKNIY
DDPYTALKDTPLAQTAFFNRCEEEGKNIFELRKGLQDAFRSDSLLELYVFLGPAKFKEVFKLKETQIKYIDDHISEFNEH
DLLLHLISDNPSEINQHTLDFGRAKVMYMDIAKEHYSAFYKPLVEEISGPGAIYNALGGASNFTTTHRRSTGPMLPTTPP
RVLQVFCDAHDKGPFVSDNIARWQTNVRELGVLNREGLSWLPSVG

Sequences:

>Translated_525_residues
MKARRSNELSKLRMRFFSALNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQELLKGADAQKKIESFLKGAIKN
VIHPGVIKGLTPNEINWNVAKAYPEYYEHEKLPDVTFGGFKVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRR
EQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSVKTDSPLYPLIKAELANLGMGGNPAAASDLCRWIPELFN
EGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSIISEPIAPHHRRQEAVCMNTDIIAYANDRETQVMMDTVALHLKNIY
DDPYTALKDTPLAQTAFFNRCEEEGKNIFELRKGLQDAFRSDSLLELYVFLGPAKFKEVFKLKETQIKYIDDHISEFNEH
DLLLHLISDNPSEINQHTLDFGRAKVMYMDIAKEHYSAFYKPLVEEISGPGAIYNALGGASNFTTTHRRSTGPMLPTTPP
RVLQVFCDAHDKGPFVSDNIARWQTNVRELGVLNREGLSWLPSVG
>Mature_525_residues
MKARRSNELSKLRMRFFSALNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQELLKGADAQKKIESFLKGAIKN
VIHPGVIKGLTPNEINWNVAKAYPEYYEHEKLPDVTFGGFKVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRR
EQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSVKTDSPLYPLIKAELANLGMGGNPAAASDLCRWIPELFN
EGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSIISEPIAPHHRRQEAVCMNTDIIAYANDRETQVMMDTVALHLKNIY
DDPYTALKDTPLAQTAFFNRCEEEGKNIFELRKGLQDAFRSDSLLELYVFLGPAKFKEVFKLKETQIKYIDDHISEFNEH
DLLLHLISDNPSEINQHTLDFGRAKVMYMDIAKEHYSAFYKPLVEEISGPGAIYNALGGASNFTTTHRRSTGPMLPTTPP
RVLQVFCDAHDKGPFVSDNIARWQTNVRELGVLNREGLSWLPSVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59458; Mature: 59458

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARRSNELSKLRMRFFSALNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQEL
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH
LKGADAQKKIESFLKGAIKNVIHPGVIKGLTPNEINWNVAKAYPEYYEHEKLPDVTFGGF
HCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHCHHHHHHCCCCCCCCCCE
KVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLLNPE
EEECCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
ANRQMKAFAKKQNISLIDIDSVKTDSPLYPLIKAELANLGMGGNPAAASDLCRWIPELFN
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
EGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSIISEPIAPHHRRQEAVCMNTDIIAYA
CCEEEEEECCCCCCHHCCCCEECCCEEEEEECCHHHCCCCCCCHHCCCCEEECCCEEEEE
NDRETQVMMDTVALHLKNIYDDPYTALKDTPLAQTAFFNRCEEEGKNIFELRKGLQDAFR
CCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
SDSLLELYVFLGPAKFKEVFKLKETQIKYIDDHISEFNEHDLLLHLISDNPSEINQHTLD
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH
FGRAKVMYMDIAKEHYSAFYKPLVEEISGPGAIYNALGGASNFTTTHRRSTGPMLPTTPP
CCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
RVLQVFCDAHDKGPFVSDNIARWQTNVRELGVLNREGLSWLPSVG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKARRSNELSKLRMRFFSALNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQEL
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH
LKGADAQKKIESFLKGAIKNVIHPGVIKGLTPNEINWNVAKAYPEYYEHEKLPDVTFGGF
HCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHCHHHHHHCCCCCCCCCCE
KVRDSNEFKFKTNVQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLLNPE
EEECCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
ANRQMKAFAKKQNISLIDIDSVKTDSPLYPLIKAELANLGMGGNPAAASDLCRWIPELFN
HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
EGFYVDIDLPVDSSKIVEGHQITGGVPIMLNMGSIISEPIAPHHRRQEAVCMNTDIIAYA
CCEEEEEECCCCCCHHCCCCEECCCEEEEEECCHHHCCCCCCCHHCCCCEEECCCEEEEE
NDRETQVMMDTVALHLKNIYDDPYTALKDTPLAQTAFFNRCEEEGKNIFELRKGLQDAFR
CCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHC
SDSLLELYVFLGPAKFKEVFKLKETQIKYIDDHISEFNEHDLLLHLISDNPSEINQHTLD
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH
FGRAKVMYMDIAKEHYSAFYKPLVEEISGPGAIYNALGGASNFTTTHRRSTGPMLPTTPP
CCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
RVLQVFCDAHDKGPFVSDNIARWQTNVRELGVLNREGLSWLPSVG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA