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The map label for this gene is helB [H]

Identifier: 54293986

GI number: 54293986

Start: 1172540

End: 1173793

Strand: Direct

Name: helB [H]

Synonym: lpl1045

Alternate gene names: 54293986

Gene position: 1172540-1173793 (Clockwise)

Preceding gene: 54293985

Following gene: 54293987

Centisome position: 35.05

GC content: 43.06

Gene sequence:

>1254_bases
ATGACATTCCTAAAGCCATTTAAGCCATCCATTCTGCTTCTTATTCTTTGGTTCGTTATGGGGGTTTTTTCCTGGGCAGG
GGAGGGCTCTCATGCTATGGAAGAAGGCAACCATCAAGAAATCATGGAAAAAGGCCCTCAAGGTGGTCGCTTATTCAAGG
AAGGTGATGTAGCCCTTGAGCTTTTGATTTTTGAACGGGGTATGCCTCCTCATTTTCGTGGCTTTGTTTATGAGAAAGGT
GAACTGATTATACCAACCAAGGCCCGTTTAGTTGTTTATCTCACCCGGTTTAATGGTAAAAAAGAGACCATTACCTTCAT
TCCCGTTGAGAATTTTTTACAAAGTAATGAAGTGATTGGAGAACCCCACTCCTTTGATGTCACGATTCAATTGGAGCTAA
AGGGCAAACGATTGTCCTGGCATTATTCCACCTATGAAGGACGAATCAAAATAGCACCGGCTATTTTAAAAGCTGCTGAT
ATTCAAACTTCGGTTGCTGAAAGCCAAACGATTAAAACACAATTAAAAGTGGTCGGAAAGATTGTCCCCAATCGCGATAC
ACTTGCTCCGATTTACCCTCGTTATTCTGGGATTATTAAAGCGTTGACTAAAAATTTAGGCGATGAGGTCACTAAGGGCG
AAGTGTTGGTCACCATTGAAAGTAATGAAAGCCTGCAAAATTACGATATTACCGCACCCATAACGGGGACCATTGTACAA
AAGTATGCTACCAATGGGGAGCAGGCGCAAAACACGAAACCTATTTATGAAGTGGCTAATTTAACTACTGTGTGGGCTGA
CTTTACCTTATACCGCAAAGAAACTCCTCGGGTAAAACAAGGAATGGAGGTTGTTGTGACAGGAGATGAGGGAAAACCAA
AGTCCACCAGTGTCATTTCTTACATTGCGCCTTTGGGAATTGAAGACAGCCAAACCACTTTAGCACGTGCTGTACTTTCT
AATGAAGAGCGTCTCTGGTTGCCAGGCATGTATGTGAATGGCGCGATTACCATTAAAGAAAAAACAGTTCCGGTTGCCGT
TCTTCTTTCTGCAATACAGCGTTTGAATGATAAGGACGTGATTTTTGTGCGGCAAGGTGATTATTTTGAAGCAACACCCG
TCATTTTAGGCGAAAAGGATGAACAATGGGTGGAAGTGGTGTCAGGTCTTGATGTTGGTCAGCCTTATGTCAGCAAAAAC
AGCTTCTTTATGAAGGCAGAACTTGGCAAGGAAGGCGCAAGCCACGAGCACTAA

Upstream 100 bases:

>100_bases
AAGAAGAGCGGCATTACCAGCAGGCTCATGCCGATTATCATAAAGCCTTAATTCAGATGACAGGACTTTTAGGACTGGAT
AATTCTAAGGAGGAGAGCAA

Downstream 100 bases:

>100_bases
GGATGGATGATGCTTGAGAAAATTATTCGTTTTTCCCTAAAACATCGTTGGTTTGTCTTATTATTTACGGCAGTGATTGC
CGCTTTGGGTGTATACAATT

Product: HelB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTFLKPFKPSILLLILWFVMGVFSWAGEGSHAMEEGNHQEIMEKGPQGGRLFKEGDVALELLIFERGMPPHFRGFVYEKG
ELIIPTKARLVVYLTRFNGKKETITFIPVENFLQSNEVIGEPHSFDVTIQLELKGKRLSWHYSTYEGRIKIAPAILKAAD
IQTSVAESQTIKTQLKVVGKIVPNRDTLAPIYPRYSGIIKALTKNLGDEVTKGEVLVTIESNESLQNYDITAPITGTIVQ
KYATNGEQAQNTKPIYEVANLTTVWADFTLYRKETPRVKQGMEVVVTGDEGKPKSTSVISYIAPLGIEDSQTTLARAVLS
NEERLWLPGMYVNGAITIKEKTVPVAVLLSAIQRLNDKDVIFVRQGDYFEATPVILGEKDEQWVEVVSGLDVGQPYVSKN
SFFMKAELGKEGASHEH

Sequences:

>Translated_417_residues
MTFLKPFKPSILLLILWFVMGVFSWAGEGSHAMEEGNHQEIMEKGPQGGRLFKEGDVALELLIFERGMPPHFRGFVYEKG
ELIIPTKARLVVYLTRFNGKKETITFIPVENFLQSNEVIGEPHSFDVTIQLELKGKRLSWHYSTYEGRIKIAPAILKAAD
IQTSVAESQTIKTQLKVVGKIVPNRDTLAPIYPRYSGIIKALTKNLGDEVTKGEVLVTIESNESLQNYDITAPITGTIVQ
KYATNGEQAQNTKPIYEVANLTTVWADFTLYRKETPRVKQGMEVVVTGDEGKPKSTSVISYIAPLGIEDSQTTLARAVLS
NEERLWLPGMYVNGAITIKEKTVPVAVLLSAIQRLNDKDVIFVRQGDYFEATPVILGEKDEQWVEVVSGLDVGQPYVSKN
SFFMKAELGKEGASHEH
>Mature_416_residues
TFLKPFKPSILLLILWFVMGVFSWAGEGSHAMEEGNHQEIMEKGPQGGRLFKEGDVALELLIFERGMPPHFRGFVYEKGE
LIIPTKARLVVYLTRFNGKKETITFIPVENFLQSNEVIGEPHSFDVTIQLELKGKRLSWHYSTYEGRIKIAPAILKAADI
QTSVAESQTIKTQLKVVGKIVPNRDTLAPIYPRYSGIIKALTKNLGDEVTKGEVLVTIESNESLQNYDITAPITGTIVQK
YATNGEQAQNTKPIYEVANLTTVWADFTLYRKETPRVKQGMEVVVTGDEGKPKSTSVISYIAPLGIEDSQTTLARAVLSN
EERLWLPGMYVNGAITIKEKTVPVAVLLSAIQRLNDKDVIFVRQGDYFEATPVILGEKDEQWVEVVSGLDVGQPYVSKNS
FFMKAELGKEGASHEH

Specific function: CzcA and CzcB together would act in zinc efflux nearly as effectively as the complete czc efflux system (CzcABC). The CzcB protein is thought to funnel zinc cations to the CzcA transport protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Attached To The Inner Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005695
- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 46537; Mature: 46406

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFLKPFKPSILLLILWFVMGVFSWAGEGSHAMEEGNHQEIMEKGPQGGRLFKEGDVALE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCCCEEECCCEEEE
LLIFERGMPPHFRGFVYEKGELIIPTKARLVVYLTRFNGKKETITFIPVENFLQSNEVIG
EEEEECCCCCHHCCEEEECCCEEECCCCEEEEEEEECCCCCEEEEEEEHHHHHCCCCCCC
EPHSFDVTIQLELKGKRLSWHYSTYEGRIKIAPAILKAADIQTSVAESQTIKTQLKVVGK
CCCCEEEEEEEEEECCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVPNRDTLAPIYPRYSGIIKALTKNLGDEVTKGEVLVTIESNESLQNYDITAPITGTIVQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHH
KYATNGEQAQNTKPIYEVANLTTVWADFTLYRKETPRVKQGMEVVVTGDEGKPKSTSVIS
HHHCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCHHHCCCEEEEECCCCCCCCHHHHH
YIAPLGIEDSQTTLARAVLSNEERLWLPGMYVNGAITIKEKTVPVAVLLSAIQRLNDKDV
HHHCCCCCCCHHHHHHHHHCCCCEEEECCEEECCEEEEECCCCCHHHHHHHHHHCCCCCE
IFVRQGDYFEATPVILGEKDEQWVEVVSGLDVGQPYVSKNSFFMKAELGKEGASHEH
EEEECCCCEECCCEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TFLKPFKPSILLLILWFVMGVFSWAGEGSHAMEEGNHQEIMEKGPQGGRLFKEGDVALE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCCCEEECCCEEEE
LLIFERGMPPHFRGFVYEKGELIIPTKARLVVYLTRFNGKKETITFIPVENFLQSNEVIG
EEEEECCCCCHHCCEEEECCCEEECCCCEEEEEEEECCCCCEEEEEEEHHHHHCCCCCCC
EPHSFDVTIQLELKGKRLSWHYSTYEGRIKIAPAILKAADIQTSVAESQTIKTQLKVVGK
CCCCEEEEEEEEEECCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVPNRDTLAPIYPRYSGIIKALTKNLGDEVTKGEVLVTIESNESLQNYDITAPITGTIVQ
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCHHHHHH
KYATNGEQAQNTKPIYEVANLTTVWADFTLYRKETPRVKQGMEVVVTGDEGKPKSTSVIS
HHHCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCHHHCCCEEEEECCCCCCCCHHHHH
YIAPLGIEDSQTTLARAVLSNEERLWLPGMYVNGAITIKEKTVPVAVLLSAIQRLNDKDV
HHHCCCCCCCHHHHHHHHHCCCCEEEECCEEECCEEEEECCCCCHHHHHHHHHHCCCCCE
IFVRQGDYFEATPVILGEKDEQWVEVVSGLDVGQPYVSKNSFFMKAELGKEGASHEH
EEEECCCCEECCCEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8829543 [H]