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The map label for this gene is yafV [C]

Identifier: 54293923

GI number: 54293923

Start: 1099366

End: 1100172

Strand: Direct

Name: yafV [C]

Synonym: lpl0979

Alternate gene names: 54293923

Gene position: 1099366-1100172 (Clockwise)

Preceding gene: 54293921

Following gene: 54293924

Centisome position: 32.86

GC content: 40.02

Gene sequence:

>807_bases
ATGAATCGAGTAGCGCTTGTGCAAATGGCATCATCTGCCAAAATAGCAGATAATTTGCAACTCACTGAACAATATTTAAT
TGAAGCCAGGGAACAGGAAGCCAGTTTGGTTGTTCTACCTGAGAATTTTGCTTTTATGGGAATGAATGAACGAGAGAAGT
TGCACATTGCCGAATATTATGGTCAAGGACCTATACAACAAAGAATAAGTGAGTTAGCGAGAGATTTGCGGGTATGGATA
ATAGCAGGAACAATCCCGTTAAAAAGTATGGGTTCAAAGGTAAGAGCAAGTTGTATAGTTTATGATGATAAAGGCCTAAA
TGTTGCTCGTTATGATAAAATTCATTTATTTGATGTCATAGTTTCCGAGCAAGAAAAACACCAGGAATCGTTAACTATAG
AAGCAGGAAAAGATATAGCGCTTGTGGATACGCCAGTGGGGAAAATTGGGTTAACCATCTGTTATGACTTGCGTTTTCCG
GAATTGTACCAATATTTAACCCAAAGAGGCGCACAATTACTTTCAGTTCCGTCTGCTTTTACTGCGGTAACTGGAGCGGC
GCATTGGGAGGTTTTACTCAGAGCAAGAGCAATCGAAAATTTATGTTATGTCTTAGCTCCTAATCAGGGTGGGACTCATG
AAAACGGGCGTCATACTTATGGGCATAGTATGGTGGTGGAACCATGGGGTAAAGTGTTGGCACAAAAAGAAGAAGGGCAG
GGAGTAATTCTGGCTGATATTGATTTAGAGAGATTGTCACAGTTGAGAAGACAATTTCCGTGTGTTGAACATCATGTTTT
AATGTAA

Upstream 100 bases:

>100_bases
TTTATTATTAAGGCGAAAAGGTTTTTGTGTCAATTTTGTTTTGGGCTTATATGGAACGATATAGTAAGATGAAAAATATG
AATGTCATTTAGGAAAAAGG

Downstream 100 bases:

>100_bases
AAGGTATATAAATGACAAAATCTCTTGCGATAGCAAAAAATATTTTATTGACACCAGCTTCCCTGGATGAAGTCGGCATA
GAAAAATTATTCAAGACCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNRVALVQMASSAKIADNLQLTEQYLIEAREQEASLVVLPENFAFMGMNEREKLHIAEYYGQGPIQQRISELARDLRVWI
IAGTIPLKSMGSKVRASCIVYDDKGLNVARYDKIHLFDVIVSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFP
ELYQYLTQRGAQLLSVPSAFTAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRHTYGHSMVVEPWGKVLAQKEEGQ
GVILADIDLERLSQLRRQFPCVEHHVLM

Sequences:

>Translated_268_residues
MNRVALVQMASSAKIADNLQLTEQYLIEAREQEASLVVLPENFAFMGMNEREKLHIAEYYGQGPIQQRISELARDLRVWI
IAGTIPLKSMGSKVRASCIVYDDKGLNVARYDKIHLFDVIVSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFP
ELYQYLTQRGAQLLSVPSAFTAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRHTYGHSMVVEPWGKVLAQKEEGQ
GVILADIDLERLSQLRRQFPCVEHHVLM
>Mature_268_residues
MNRVALVQMASSAKIADNLQLTEQYLIEAREQEASLVVLPENFAFMGMNEREKLHIAEYYGQGPIQQRISELARDLRVWI
IAGTIPLKSMGSKVRASCIVYDDKGLNVARYDKIHLFDVIVSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFP
ELYQYLTQRGAQLLSVPSAFTAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRHTYGHSMVVEPWGKVLAQKEEGQ
GVILADIDLERLSQLRRQFPCVEHHVLM

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI297632348, Length=266, Percent_Identity=43.2330827067669, Blast_Score=211, Evalue=5e-55,
Organism=Homo sapiens, GI5031947, Length=266, Percent_Identity=43.2330827067669, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI297632350, Length=266, Percent_Identity=43.2330827067669, Blast_Score=211, Evalue=6e-55,
Organism=Homo sapiens, GI9910460, Length=264, Percent_Identity=38.2575757575758, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI297632346, Length=192, Percent_Identity=36.9791666666667, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1786412, Length=227, Percent_Identity=30.8370044052863, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17556280, Length=264, Percent_Identity=42.4242424242424, Blast_Score=213, Evalue=1e-55,
Organism=Saccharomyces cerevisiae, GI6322335, Length=292, Percent_Identity=35.2739726027397, Blast_Score=179, Evalue=4e-46,
Organism=Saccharomyces cerevisiae, GI6323383, Length=268, Percent_Identity=35.4477611940299, Blast_Score=165, Evalue=6e-42,
Organism=Drosophila melanogaster, GI17933642, Length=263, Percent_Identity=40.3041825095057, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI21355835, Length=260, Percent_Identity=35.3846153846154, Blast_Score=163, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 30126; Mature: 30126

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVALVQMASSAKIADNLQLTEQYLIEAREQEASLVVLPENFAFMGMNEREKLHIAEYY
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCEEEEHHH
GQGPIQQRISELARDLRVWIIAGTIPLKSMGSKVRASCIVYDDKGLNVARYDKIHLFDVI
CCCHHHHHHHHHHHHEEEEEEECCCCHHHCCCCCEEEEEEEECCCCCEEEECCEEEEHHH
VSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFPELYQYLTQRGAQLLSVPSAF
HCCHHHHHHCEEEECCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHCCHHEECCCCHH
TAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRHTYGHSMVVEPWGKVLAQKEEGQ
HHHHCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEECCCCEEECCHHHHHCCCCCCC
GVILADIDLERLSQLRRQFPCVEHHVLM
EEEEEECCHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MNRVALVQMASSAKIADNLQLTEQYLIEAREQEASLVVLPENFAFMGMNEREKLHIAEYY
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCEEEEHHH
GQGPIQQRISELARDLRVWIIAGTIPLKSMGSKVRASCIVYDDKGLNVARYDKIHLFDVI
CCCHHHHHHHHHHHHEEEEEEECCCCHHHCCCCCEEEEEEEECCCCCEEEECCEEEEHHH
VSEQEKHQESLTIEAGKDIALVDTPVGKIGLTICYDLRFPELYQYLTQRGAQLLSVPSAF
HCCHHHHHHCEEEECCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHCCHHEECCCCHH
TAVTGAAHWEVLLRARAIENLCYVLAPNQGGTHENGRHTYGHSMVVEPWGKVLAQKEEGQ
HHHHCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCEECCCCEEECCHHHHHCCCCCCC
GVILADIDLERLSQLRRQFPCVEHHVLM
EEEEEECCHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]