Click here to switch to the map view.

The map label for this gene is yccA [H]

Identifier: 54293922

GI number: 54293922

Start: 1098473

End: 1099147

Strand: Reverse

Name: yccA [H]

Synonym: lpl0978

Alternate gene names: 54293922

Gene position: 1099147-1098473 (Counterclockwise)

Preceding gene: 54293927

Following gene: 54293916

Centisome position: 32.85

GC content: 37.93

Gene sequence:

>675_bases
ATGAACCGAAATGATATCACCATACTTAGTCAACAAAGAGAATCTGTGCTCGCAACCAATAAGGTCCTGCGAAATACGTA
TTTACTGCTAAGTTTAACCTTCATATTTAGCGCATTAACTGCCTACGTAGCCTTTATTAGTGGAGCTCGCCCAATGAATC
CACTATTAATGATAGTTGGCGTTTATGGTTTGATGTTTCTAACTCAAGCTTTAAGAAATAGCGTTTGGGGTTTGGTAAGC
GTCTTTGCTTTTACAGGGTTTTTAGGATATACCATTGGCCCATTACTCAACTATTACATCACAGGTTTTTCAAATGGCCC
ACAAATAGTCGCTACTGCTTTAGGTGGTACTGGAATGATCTTTTTTGCTCTATCAGGATATGCCCTGACAACGAAAAAAG
ATTTTAGCTACTTGGGTGGATTTCTTTTTGTTGGCGTTATGGTTGCCTTATTGGCGATGATAGCGGGAATATTTATACAA
ATACCAGCTTTGCAATTAGTAATTTCTGCTGCTTTTGTATTAATTTCATCTGGATTGATTCTATTGCAAACCAGCGCCAT
AATTCATGAAGGAGAAACCAATTACATAATGGCGACAATTGGTTTGTTTGTTTCCATTTATAACTTATTTGTTAGCCTAC
TGAACCTGTTAAGCGCATTCTCAGGTCGCGACTAA

Upstream 100 bases:

>100_bases
GTAAATTTTATTACAAAATTTTCAAGTGATGCGACTTGAAAAATAGGAAATTTGACCATAGATATGCTACACTGATAATA
AATAACTGGAGTTCTGAACA

Downstream 100 bases:

>100_bases
TTTAATATCGTCTCCTCTACCTGAGTCCCGGCTGTATGCCGGGATTTTTTTATCGATCAATTGTTTAAAAGGAAATGTAA
GAGAATATTTCAACATGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVAFISGARPMNPLLMIVGVYGLMFLTQALRNSVWGLVS
VFAFTGFLGYTIGPLLNYYITGFSNGPQIVATALGGTGMIFFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQ
IPALQLVISAAFVLISSGLILLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLSAFSGRD

Sequences:

>Translated_224_residues
MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVAFISGARPMNPLLMIVGVYGLMFLTQALRNSVWGLVS
VFAFTGFLGYTIGPLLNYYITGFSNGPQIVATALGGTGMIFFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQ
IPALQLVISAAFVLISSGLILLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLSAFSGRD
>Mature_224_residues
MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVAFISGARPMNPLLMIVGVYGLMFLTQALRNSVWGLVS
VFAFTGFLGYTIGPLLNYYITGFSNGPQIVATALGGTGMIFFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQ
IPALQLVISAAFVLISSGLILLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLSAFSGRD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=215, Percent_Identity=55.3488372093023, Blast_Score=224, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 24205; Mature: 24205

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVAFISGARPMNPLLMIVG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VYGLMFLTQALRNSVWGLVSVFAFTGFLGYTIGPLLNYYITGFSNGPQIVATALGGTGMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHE
FFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQIPALQLVISAAFVLISSGLI
EHEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLSAFSGRD
HEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRNDITILSQQRESVLATNKVLRNTYLLLSLTFIFSALTAYVAFISGARPMNPLLMIVG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VYGLMFLTQALRNSVWGLVSVFAFTGFLGYTIGPLLNYYITGFSNGPQIVATALGGTGMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHE
FFALSGYALTTKKDFSYLGGFLFVGVMVALLAMIAGIFIQIPALQLVISAAFVLISSGLI
EHEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LLQTSAIIHEGETNYIMATIGLFVSIYNLFVSLLNLLSAFSGRD
HEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]