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The map label for this gene is cph2 [H]

Identifier: 54293856

GI number: 54293856

Start: 1023463

End: 1024596

Strand: Direct

Name: cph2 [H]

Synonym: lpl0912

Alternate gene names: 54293856

Gene position: 1023463-1024596 (Clockwise)

Preceding gene: 54293849

Following gene: 54293858

Centisome position: 30.59

GC content: 32.54

Gene sequence:

>1134_bases
ATGATTTCATCCAAGCATTACAAGGAAAGTATGACTTTGCTGGTTGAGGGATCTCTAAGAGCAATTCCGTTCAATATCAT
TTTGGCTACATTGCTTGTCATTGACCTTGTTTATAATAATGTGCCTGCATTAATAATAGGGGTATGGATTTTTGCTGTTG
TCTTTATAAGCTTGGTAAGAAGTCTTTTCTGTTGGAAAATAATTAAGCGGGGAGTGGAACAAAATAAAATACAATCCACT
TTGCTCAAGTTTTTTCTTCTTACTTTTGTCATGGGCAGTATATGGGGGGCGTGTTACTTCATTACTTTACCTTATTTAAA
TGACCTTCATGAATTCATTATTATTTTGGTATTTGGCGGAATGTGCGCAGGCGCAATTGCCTCTCTCTCTGTTTATTTAC
CAGCTTATTATGCCTATGTTTTCCCAATGCTTATACCAGTCATTATTTATAATTATGCCTTGTTAGATCTCGATAGAACG
ATTTTAGCAACCATGTTTCTGATTTTTATTGCTATGCTTATTATTTCAGCAAGGATTAATAATAGATTACTCAATCAAAA
TTTTCGATTGTTCAATGAAAAAGAACTATTAATTAGTGAATTGAAAGTGATGACAATAACTGATTCTTTGACAGGCTTAT
ATAACAGGAGATATTTTGACACGCTATTCCCGCAGGAGTTTAATCGAGCAAGACGTAATCAGTATTTTTTAAGCCTGGTG
TCAATAGATGCAGATAATTTTAAATTAATCAATGATAATTTGGGACATCCTTTTGGTGATAAAGTCCTTATCAGTATCGC
TGATTTATTAAAAAAAATATTTCGACGTTCGAACGATATACTGTTTCGTCTTGGGGGAGATGAGTTTGCAATAATTATCG
CTAATCAGCCTATTAAAGACACAATATCTATTTGTCAATCAATTAAAAATCCTTTTAAAACAGAAAACTTAAATCATAAT
TATGGTTTAAACGAGCAATTACTGATGAGTCATGTCACCCTAAGCATAGGGATTGTTTATATTCATTTTGAAAGTTCAGT
CAGTATAGAGCATGCAATTACTGCCGCTGATAAGGCATTATATCAAGCTAAAAAAAAAGGAAAAAACCAAGTTGTAGTAA
AAAAACTACTTTAA

Upstream 100 bases:

>100_bases
AATAACACAGAATAAAGGGCAATATATGTTAAGACTCTATGAGAATCTCAATGTACTATAATTTTAACGTGTGGATATTA
ATTTATGGACATTGGATAAA

Downstream 100 bases:

>100_bases
GAAGATGACATTCTATCTTTAACTGAGATGGCGCCTGGAAGCTGCGTCGTATCTTAATGGATTATAAGTTGACAGTAAAT
CCTAATAAAATTCCATGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MISSKHYKESMTLLVEGSLRAIPFNIILATLLVIDLVYNNVPALIIGVWIFAVVFISLVRSLFCWKIIKRGVEQNKIQST
LLKFFLLTFVMGSIWGACYFITLPYLNDLHEFIIILVFGGMCAGAIASLSVYLPAYYAYVFPMLIPVIIYNYALLDLDRT
ILATMFLIFIAMLIISARINNRLLNQNFRLFNEKELLISELKVMTITDSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLV
SIDADNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNPFKTENLNHN
YGLNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKALYQAKKKGKNQVVVKKLL

Sequences:

>Translated_377_residues
MISSKHYKESMTLLVEGSLRAIPFNIILATLLVIDLVYNNVPALIIGVWIFAVVFISLVRSLFCWKIIKRGVEQNKIQST
LLKFFLLTFVMGSIWGACYFITLPYLNDLHEFIIILVFGGMCAGAIASLSVYLPAYYAYVFPMLIPVIIYNYALLDLDRT
ILATMFLIFIAMLIISARINNRLLNQNFRLFNEKELLISELKVMTITDSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLV
SIDADNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNPFKTENLNHN
YGLNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKALYQAKKKGKNQVVVKKLL
>Mature_377_residues
MISSKHYKESMTLLVEGSLRAIPFNIILATLLVIDLVYNNVPALIIGVWIFAVVFISLVRSLFCWKIIKRGVEQNKIQST
LLKFFLLTFVMGSIWGACYFITLPYLNDLHEFIIILVFGGMCAGAIASLSVYLPAYYAYVFPMLIPVIIYNYALLDLDRT
ILATMFLIFIAMLIISARINNRLLNQNFRLFNEKELLISELKVMTITDSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLV
SIDADNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNPFKTENLNHN
YGLNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKALYQAKKKGKNQVVVKKLL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.2272727272727, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=35.1190476190476, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=32.1637426900585, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=32.967032967033, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=34.4444444444444, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=217, Percent_Identity=28.110599078341, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788085, Length=228, Percent_Identity=31.5789473684211, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1787816, Length=207, Percent_Identity=28.5024154589372, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=182, Percent_Identity=35.1648351648352, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=29.8780487804878, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=207, Percent_Identity=27.0531400966184, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43062; Mature: 43062

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSKHYKESMTLLVEGSLRAIPFNIILATLLVIDLVYNNVPALIIGVWIFAVVFISLVR
CCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SLFCWKIIKRGVEQNKIQSTLLKFFLLTFVMGSIWGACYFITLPYLNDLHEFIIILVFGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MCAGAIASLSVYLPAYYAYVFPMLIPVIIYNYALLDLDRTILATMFLIFIAMLIISARIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLLNQNFRLFNEKELLISELKVMTITDSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLV
HHHHCCCCHHCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEE
SIDADNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKD
EECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISICQSIKNPFKTENLNHNYGLNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKAL
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHH
YQAKKKGKNQVVVKKLL
HHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MISSKHYKESMTLLVEGSLRAIPFNIILATLLVIDLVYNNVPALIIGVWIFAVVFISLVR
CCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SLFCWKIIKRGVEQNKIQSTLLKFFLLTFVMGSIWGACYFITLPYLNDLHEFIIILVFGG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MCAGAIASLSVYLPAYYAYVFPMLIPVIIYNYALLDLDRTILATMFLIFIAMLIISARIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRLLNQNFRLFNEKELLISELKVMTITDSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLV
HHHHCCCCHHCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEE
SIDADNFKLINDNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKD
EECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHH
TISICQSIKNPFKTENLNHNYGLNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKAL
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHH
YQAKKKGKNQVVVKKLL
HHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]