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The map label for this gene is cycH [H]

Identifier: 54293839

GI number: 54293839

Start: 1006777

End: 1007463

Strand: Direct

Name: cycH [H]

Synonym: lpl0895

Alternate gene names: 54293839

Gene position: 1006777-1007463 (Clockwise)

Preceding gene: 54293838

Following gene: 54293840

Centisome position: 30.09

GC content: 41.19

Gene sequence:

>687_bases
ATGAATGAATGGTGGTTAATTATTTTATTGGTTGTTTTAGCCGTTTTTGCATGCACTCTTATTATCTATCCTTTGCGGCG
CAATCGTTTGGTAAGTTTGTTGCTCGCCCCCATTATTTTTATAATGGTTTTTACAGGGTACTATTTTTGGGGAGATTTTG
CTCGGTGGCAAGAATATCTACATCGAAATGAGGCTCAGGAGCTAGCGCAATCGATGCTAAAATCGATTAAAAGCCCTCAG
GAATTAATCGACAAGCTGAAGGCCAAGTTGGATGCGCAGCCTGAAAGTGCCAAGGGTTGGTATTTGTTAGGCAGATTATA
CAGTAGTCAAAAGGATAACCAAAATGCTTCCCTCGCTTTTGCAAAAGCCCACCAGCTTAAACCTGAGGACGAGCAATTTG
CAGTCAATTATGCCCACAGTTTATGGCAATTGAGTAATCAACAGTTCAATCCTGATATTTTAGAAATTTTTCATACCTTA
TTAAAAAATAACCCCAGGCAACCGGATGCTTTAGCCATGCTTGCGATGCATGCTTACTTAAGTCATGATTATGAAGCTGC
GATTAATTACTGGCAACGGCTACTCCAGTTGGCGCCAGCGCAGTCCGAAGAAGCATTGGCTATTCGCAAGGCAATAGCAA
AAGCCGAGAAACAAATTAATAGAGGGGGAAAGAAAAGTGACAGATAA

Upstream 100 bases:

>100_bases
CCTGTTAAGAGCGTGACTCTTTTATTGTGGTTTGGCCCATTCCTGTTTTTATTGATTGGCTTTATTATTTTTTGGCGGAC
ATGTTTTAAGCGAAATTCTC

Downstream 100 bases:

>100_bases
AGTTTACCAAATCGTGGAGTTAATTGGGACCTCGCAGGAAGGAATTGAAAAAGCAATTGATAATGCAATAAAGCAAGTGG
CTAAAACGCATGGGAAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNEWWLIILLVVLAVFACTLIIYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEAQELAQSMLKSIKSPQ
ELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTL
LKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEKQINRGGKKSDR

Sequences:

>Translated_228_residues
MNEWWLIILLVVLAVFACTLIIYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEAQELAQSMLKSIKSPQ
ELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTL
LKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEKQINRGGKKSDR
>Mature_228_residues
MNEWWLIILLVVLAVFACTLIIYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEAQELAQSMLKSIKSPQ
ELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTL
LKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEKQINRGGKKSDR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=135, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790513, Length=166, Percent_Identity=26.5060240963855, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26431; Mature: 26431

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEWWLIILLVVLAVFACTLIIYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRNEAQELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
AKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYL
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEKQINRGGKKSDR
HCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNEWWLIILLVVLAVFACTLIIYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRNEAQELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
AKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYL
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
SHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEKQINRGGKKSDR
HCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]