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The map label for this gene is ccmH [H]

Identifier: 54293838

GI number: 54293838

Start: 1006383

End: 1006784

Strand: Direct

Name: ccmH [H]

Synonym: lpl0894

Alternate gene names: 54293838

Gene position: 1006383-1006784 (Clockwise)

Preceding gene: 54293837

Following gene: 54293839

Centisome position: 30.08

GC content: 35.07

Gene sequence:

>402_bases
ATGAGAGTATTCCACTTCTGTTTTAAGGTGATTTTATTGCTGCTATTAGTATCCGTTGCGTTTGCAAATAGTATGTATCC
ATTGGACTCAGCAAGAAAAGAAGCACAATTTAACCATCTTTTAAAAGATTTGCGTTGTTTGGTATGCCAAAATCAGGATT
TGGCAGATTCAAATGCTCAATTAGCGAAGGATTTACGTTTTCAGGTTTATGAATTAGTGAAAGAGGGCAAAAGCGATAGT
GAAATAATGGATTATCTAACTGCACGTTATGGGGATTTTATACTATTTAAACCGCCTGTTAAGAGCGTGACTCTTTTATT
GTGGTTTGGCCCATTCCTGTTTTTATTGATTGGCTTTATTATTTTTTGGCGGACATGTTTTAAGCGAAATTCTCATGAAT
GA

Upstream 100 bases:

>100_bases
ATAAGAAAGGAGTAGTCCGCTACAGGCATGTCGGGATAATGAATCAGAAAACCTGGTTAACTGATATTTTACCTTTAATG
AGGAATTTGGAGAAATCATA

Downstream 100 bases:

>100_bases
ATGGTGGTTAATTATTTTATTGGTTGTTTTAGCCGTTTTTGCATGCACTCTTATTATCTATCCTTTGCGGCGCAATCGTT
TGGTAAGTTTGTTGCTCGCC

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDLRCLVCQNQDLADSNAQLAKDLRFQVYELVKEGKSDS
EIMDYLTARYGDFILFKPPVKSVTLLLWFGPFLFLLIGFIIFWRTCFKRNSHE

Sequences:

>Translated_133_residues
MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDLRCLVCQNQDLADSNAQLAKDLRFQVYELVKEGKSDS
EIMDYLTARYGDFILFKPPVKSVTLLLWFGPFLFLLIGFIIFWRTCFKRNSHE
>Mature_133_residues
MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDLRCLVCQNQDLADSNAQLAKDLRFQVYELVKEGKSDS
EIMDYLTARYGDFILFKPPVKSVTLLLWFGPFLFLLIGFIIFWRTCFKRNSHE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=120, Percent_Identity=40, Blast_Score=106, Evalue=7e-25,
Organism=Escherichia coli, GI1790512, Length=66, Percent_Identity=46.969696969697, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15592; Mature: 15592

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDLRCLVCQNQDLADSNAQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LAKDLRFQVYELVKEGKSDSEIMDYLTARYGDFILFKPPVKSVTLLLWFGPFLFLLIGFI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
IFWRTCFKRNSHE
HHHHHHHHCCCCC
>Mature Secondary Structure
MRVFHFCFKVILLLLLVSVAFANSMYPLDSARKEAQFNHLLKDLRCLVCQNQDLADSNAQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LAKDLRFQVYELVKEGKSDSEIMDYLTARYGDFILFKPPVKSVTLLLWFGPFLFLLIGFI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
IFWRTCFKRNSHE
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]