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The map label for this gene is csrA

Identifier: 54293764

GI number: 54293764

Start: 928346

End: 928540

Strand: Direct

Name: csrA

Synonym: lpl0820

Alternate gene names: 54293764

Gene position: 928346-928540 (Clockwise)

Preceding gene: 54293763

Following gene: 54293768

Centisome position: 27.75

GC content: 34.36

Gene sequence:

>195_bases
ATGTTGATTTTGACTCGGCGTATAGGTGAAACATTAATCATAGGTGATGATGTCAATATTACTGTTTTAGGTGTAAAAGG
CAATCAAGTTCGCTTAGGAATTAATGCTCCGAAAGATGTTTCTGTTCATCGTGAAGAAATTTATTTGCGCATACAACAAG
AAAAAGAATCTGATGATTCGGAACAAGCAGTATAA

Upstream 100 bases:

>100_bases
ATAAATTTGCTTAAATATTGTTCATGTTGTAGTTGCCAAGAACACCATGGAAGCGTTCTATGGAGAAGTAGGTAGCTGCT
ATGTTAGGGAGATTTTAGTC

Downstream 100 bases:

>100_bases
ATCGATTTCCACGCAGTTCATCCAGTTCCGAGTACTTAAAAATACTCGGGACGAACTATGTAACTAAATGTAACTTCCTC
TTTAATAATGCTTATTATAC

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQAV

Sequences:

>Translated_64_residues
MLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQAV
>Mature_64_residues
MLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDSEQAV

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=76.6666666666667, Blast_Score=99, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_LEGPA (Q5X6W9)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123174.1
- HSSP:   O69078
- ProteinModelPortal:   Q5X6W9
- SMR:   Q5X6W9
- STRING:   Q5X6W9
- GeneID:   3118612
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp0845
- LegioList:   lpp0845
- eggNOG:   COG1551
- HOGENOM:   HBG724655
- OMA:   RIGINAP
- ProtClustDB:   PRK01712
- BioCyc:   LPNE297246:LPP0845-MONOMER
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 7187; Mature: 7187

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDS
CEEEECCCCCEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCC
EQAV
CCCC
>Mature Secondary Structure
MLILTRRIGETLIIGDDVNITVLGVKGNQVRLGINAPKDVSVHREEIYLRIQQEKESDDS
CEEEECCCCCEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCC
EQAV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA