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The map label for this gene is ydjX [C]

Identifier: 54293578

GI number: 54293578

Start: 680441

End: 681124

Strand: Reverse

Name: ydjX [C]

Synonym: lpl0630

Alternate gene names: 54293578

Gene position: 681124-680441 (Counterclockwise)

Preceding gene: 54293581

Following gene: 54293575

Centisome position: 20.36

GC content: 37.43

Gene sequence:

>684_bases
TTGCGAGTGCTTAATTCCTGTAATAAAGTGAGGGGCATCTTTACTTTAACACAAAAAACCATTAAGACATTCTGTTCCAT
TTTAGCCATATTAGTTTTAATTATTTTCGCAGTGGTCTTTCATAATCATTCGTTAGAGATCATTGATTATATAGACGATC
TGGGTTGGCTTGCCCCTGTTCTTTTCTTGATCACCTACTGCCTTGCGACTTTATTGCTTTTACCCACAATGGTATTAACT
CTGGCTGGGGGAGCTGTGTTTGGGCCTGTATTTGGTACCTTGCTTAATTTATTGGGAGCCACTAGCGGCGCTGCGTTTGC
ATTTCTGATAACAAGACACCTGGTTTACGATTGGTTCTCAACCAAAAAAGGTGAAAAAATAAACAAATTGATTGCCGGAG
TAGATGAGAAAGGTTGGGTTTTTGTGGCTTTCTTGCGATTGTTTCCAATAGTCCCTTTTAACCTGGTCAACTATGGCTTA
GGAGTAACTGGCATATCATTTCGTCTTTATTTGCTAACTACTTTTATTTTTCTAATTCCAGCAGAAATTATTTATACCTA
TTTTGGATACGTCGGCATGGATGCTCTGACAAGGCCAGGCCATTTATATAGGAATGGTGGAATTTTTCTAACTGGATTAG
CGATTTTCTTTTTACTTGTTATCAGAATAATGAAAAAAAGATAA

Upstream 100 bases:

>100_bases
GAATAGATAGGTTTATGAATCATGTTGATTTCATTTAAAAAACTTAAGCGAAAGCAACATCTGTTTTTATGATAATTTAC
CCGGAATATTGAGAGAGGGC

Downstream 100 bases:

>100_bases
TTGGTTTTTCAATTAATAAAAATTTATCAAGACTCATCCTGATTTAATAAAAAGATCAACTTATCGATAATTGGATGATT
GACTTCAAAAATAATGTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRVLNSCNKVRGIFTLTQKTIKTFCSILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPTMVLT
LAGGAVFGPVFGTLLNLLGATSGAAFAFLITRHLVYDWFSTKKGEKINKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGL
GVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR

Sequences:

>Translated_227_residues
MRVLNSCNKVRGIFTLTQKTIKTFCSILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPTMVLT
LAGGAVFGPVFGTLLNLLGATSGAAFAFLITRHLVYDWFSTKKGEKINKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGL
GVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
>Mature_227_residues
MRVLNSCNKVRGIFTLTQKTIKTFCSILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPVLFLITYCLATLLLLPTMVLT
LAGGAVFGPVFGTLLNLLGATSGAAFAFLITRHLVYDWFSTKKGEKINKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGL
GVTGISFRLYLLTTFIFLIPAEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=166, Percent_Identity=34.9397590361446, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788049, Length=184, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25371; Mature: 25371

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLNSCNKVRGIFTLTQKTIKTFCSILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LFLITYCLATLLLLPTMVLTLAGGAVFGPVFGTLLNLLGATSGAAFAFLITRHLVYDWFS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TKKGEKINKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGLGVTGISFRLYLLTTFIFLIP
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
HHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRVLNSCNKVRGIFTLTQKTIKTFCSILAILVLIIFAVVFHNHSLEIIDYIDDLGWLAPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LFLITYCLATLLLLPTMVLTLAGGAVFGPVFGTLLNLLGATSGAAFAFLITRHLVYDWFS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TKKGEKINKLIAGVDEKGWVFVAFLRLFPIVPFNLVNYGLGVTGISFRLYLLTTFIFLIP
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AEIIYTYFGYVGMDALTRPGHLYRNGGIFLTGLAIFFLLVIRIMKKR
HHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]