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The map label for this gene is ygfA [C]

Identifier: 54293575

GI number: 54293575

Start: 678572

End: 679153

Strand: Reverse

Name: ygfA [C]

Synonym: lpl0627

Alternate gene names: 54293575

Gene position: 679153-678572 (Counterclockwise)

Preceding gene: 54293578

Following gene: 54293573

Centisome position: 20.3

GC content: 42.1

Gene sequence:

>582_bases
ATGTCAGACCAATATAAAGTTGCTCTAAGAAATACCATAAAACAGGTAAGATCCAAGCTTTCTGTATCCTACAGAACAGC
ATCTTCCAATCAAATTTGTACTCGTATCCGCTCGCTGGAACAATACAGGCAAGCAAAGCGAATAGCCTTGTACTTTGCGG
TTAATGGAGAAGTTGATTTAACATTTCTCTGGAAAAGCGCGCCCCTCCAGGGGAAGTATTGTTATTTTCCGGTATTAAAT
AATGATTCCACTCTGTCTTTTTTACCAGCCACCCCCAACACCCCTTTTAAAACGAATAAATACGATATCCCGGAACCGGA
CGTTGATATTGAGTTGGCTTTGCCTGTTAATGAATTAGACTTGATTATCATGCCTCTGGTTGCTTTTGATGCACACTGTA
CTCGTTTGGGTATGGGCTCAGGCTACTATGATCGCACCTTGTCTGATAAATCAAAAGCGCATCTCTTAGGAGTCGCCTAC
CAATTTCAAAGGGTTGATTACATAGAACCACGCCCTTGGGATGTTCCCCTGGATGCCGTAATAACTCAAAAAGCTATTTA
TTGGCGAAATCCCTTGGCCTAA

Upstream 100 bases:

>100_bases
AATCACTCAATGTTTAAAACAACATATTGATACCTGGAAACACTTGAACTTTAAACCCAATCCATCTAATAATAAAAAAG
AAAATTAGTGATACCAAATC

Downstream 100 bases:

>100_bases
AATGACATTCTATAGAGCGTCTGTACCGACTTCCCCGGTTCTAACCCTCACTACCTGTTCCAAAGCATAAACAAAAATCT
TGCCATCACCAATTTTACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSDQYKVALRNTIKQVRSKLSVSYRTASSNQICTRIRSLEQYRQAKRIALYFAVNGEVDLTFLWKSAPLQGKYCYFPVLN
NDSTLSFLPATPNTPFKTNKYDIPEPDVDIELALPVNELDLIIMPLVAFDAHCTRLGMGSGYYDRTLSDKSKAHLLGVAY
QFQRVDYIEPRPWDVPLDAVITQKAIYWRNPLA

Sequences:

>Translated_193_residues
MSDQYKVALRNTIKQVRSKLSVSYRTASSNQICTRIRSLEQYRQAKRIALYFAVNGEVDLTFLWKSAPLQGKYCYFPVLN
NDSTLSFLPATPNTPFKTNKYDIPEPDVDIELALPVNELDLIIMPLVAFDAHCTRLGMGSGYYDRTLSDKSKAHLLGVAY
QFQRVDYIEPRPWDVPLDAVITQKAIYWRNPLA
>Mature_192_residues
SDQYKVALRNTIKQVRSKLSVSYRTASSNQICTRIRSLEQYRQAKRIALYFAVNGEVDLTFLWKSAPLQGKYCYFPVLNN
DSTLSFLPATPNTPFKTNKYDIPEPDVDIELALPVNELDLIIMPLVAFDAHCTRLGMGSGYYDRTLSDKSKAHLLGVAYQ
FQRVDYIEPRPWDVPLDAVITQKAIYWRNPLA

Specific function: Unknown

COG id: COG0212

COG function: function code H; 5-formyltetrahydrofolate cyclo-ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 5-formyltetrahydrofolate cyclo-ligase family [H]

Homologues:

Organism=Homo sapiens, GI5453746, Length=195, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1789278, Length=179, Percent_Identity=34.6368715083799, Blast_Score=108, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17510857, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002698 [H]

Pfam domain/function: PF01812 5-FTHF_cyc-lig [H]

EC number: NA

Molecular weight: Translated: 22103; Mature: 21971

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQYKVALRNTIKQVRSKLSVSYRTASSNQICTRIRSLEQYRQAKRIALYFAVNGEVDL
CCCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEECCCEEE
TFLWKSAPLQGKYCYFPVLNNDSTLSFLPATPNTPFKTNKYDIPEPDVDIELALPVNELD
EEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
LIIMPLVAFDAHCTRLGMGSGYYDRTLSDKSKAHLLGVAYQFQRVDYIEPRPWDVPLDAV
CEEEHHHHHCCHHHEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHH
ITQKAIYWRNPLA
HHHHHHEECCCCC
>Mature Secondary Structure 
SDQYKVALRNTIKQVRSKLSVSYRTASSNQICTRIRSLEQYRQAKRIALYFAVNGEVDL
CCCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCEEEEEEEECCCEEE
TFLWKSAPLQGKYCYFPVLNNDSTLSFLPATPNTPFKTNKYDIPEPDVDIELALPVNELD
EEEEECCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
LIIMPLVAFDAHCTRLGMGSGYYDRTLSDKSKAHLLGVAYQFQRVDYIEPRPWDVPLDAV
CEEEHHHHHCCHHHEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHH
ITQKAIYWRNPLA
HHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]