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The map label for this gene is rbcR [H]

Identifier: 54293284

GI number: 54293284

Start: 382704

End: 383594

Strand: Reverse

Name: rbcR [H]

Synonym: lpl0332

Alternate gene names: 54293284

Gene position: 383594-382704 (Counterclockwise)

Preceding gene: 54293285

Following gene: 54293283

Centisome position: 11.47

GC content: 38.38

Gene sequence:

>891_bases
ATGGACATTAGAGACATCAAATCCTTTCTCGCTGTCATTGAATACCATTCCCTCACCCTGGCGGCTAAAAAATTGCATGT
CACTCAATCGGCCATGAGCAAACGCATTCGAAAAATAGAGGACGAGTTAAATGTACGTTTGATAATTAGCGAGGGTTCCA
AATTAATTTTTACTGAAGCAGCCAAACAGCTTATCCCTTATGCCAGGCAAATGTTTTCCGCACATCAAAATATGGTCCAT
ACCCTGAAAAACTCACAACAATTCACACAAAGCATCATCATAGGGGCTTCGGTGTATGTTTCTCACTACATATTGCCGAG
TTTTTTTAAATACTTGAAAGAAATCAATCCTGCCATTCAAGCACATCTGAAAACCATTAGTGAAAAGGAAGTGGAGTATA
TTCTGAACCATAGCACAGTTGATTTGGTTATCTGCCCGGCACGAGAAGTGTCCGAAAAATTATTAGGCGATTCTTTGCTC
TGGGAGGAAAAACTGAATTTGGTTGTGGCAGCAAATCATGAGCTAGCCCATAGAACATCCGAGCTTTTACTCTCAGAACT
TTCAGAGTACCCGGCCATCTTAACTGAGAAAGGGGCTGCGCTGCGAGATAAAATTGATAACCTATTTGAAAAAAATCAAC
TGGTGTTAAACCTGGGTTTTGAAATGAGTACTATTGATGCAATAAAATCTATAGTAGAGTACGGTCTAGGCTGGAGTTAT
CTGCCTGATAGTTTACTATCAGAAAAGTTAAAAATCTTAACAATAAAAGACCTTGAACTCACAATCCCATTTCATGCTTA
TTACCTCAAAAAAAGAATCAATGACCGCTTGATTAATGACTTACTAAGCAACTTCAAAAAATGGATAAATCGTGATGATA
AACAGGAATGA

Upstream 100 bases:

>100_bases
GCCTCGATTTTGGCTTAAACGTTATGATGATCTTGCCATCCTTATTTAGAAAGCGCTTAGTGCCTCTATGCTATACTTCT
TGTAAAAAGGCAAGAATCCT

Downstream 100 bases:

>100_bases
ATTTGCGCTTTTTCTATATGAACATTGCAATAGATAACCCTCCTCTTCATTGATCCTTTTGAACATAGACTATAATTAAT
CATAAGATAAACCCGAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDIRDIKSFLAVIEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTEAAKQLIPYARQMFSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYILPSFFKYLKEINPAIQAHLKTISEKEVEYILNHSTVDLVICPAREVSEKLLGDSLL
WEEKLNLVVAANHELAHRTSELLLSELSEYPAILTEKGAALRDKIDNLFEKNQLVLNLGFEMSTIDAIKSIVEYGLGWSY
LPDSLLSEKLKILTIKDLELTIPFHAYYLKKRINDRLINDLLSNFKKWINRDDKQE

Sequences:

>Translated_296_residues
MDIRDIKSFLAVIEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTEAAKQLIPYARQMFSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYILPSFFKYLKEINPAIQAHLKTISEKEVEYILNHSTVDLVICPAREVSEKLLGDSLL
WEEKLNLVVAANHELAHRTSELLLSELSEYPAILTEKGAALRDKIDNLFEKNQLVLNLGFEMSTIDAIKSIVEYGLGWSY
LPDSLLSEKLKILTIKDLELTIPFHAYYLKKRINDRLINDLLSNFKKWINRDDKQE
>Mature_296_residues
MDIRDIKSFLAVIEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTEAAKQLIPYARQMFSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYILPSFFKYLKEINPAIQAHLKTISEKEVEYILNHSTVDLVICPAREVSEKLLGDSLL
WEEKLNLVVAANHELAHRTSELLLSELSEYPAILTEKGAALRDKIDNLFEKNQLVLNLGFEMSTIDAIKSIVEYGLGWSY
LPDSLLSEKLKILTIKDLELTIPFHAYYLKKRINDRLINDLLSNFKKWINRDDKQE

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=27.1255060728745, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=29.4354838709677, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788296, Length=236, Percent_Identity=26.6949152542373, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=24.7148288973384, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788626, Length=269, Percent_Identity=23.7918215613383, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=298, Percent_Identity=23.1543624161074, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=25.3061224489796, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081904, Length=295, Percent_Identity=24.0677966101695, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=24.2063492063492, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=22.9007633587786, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34040; Mature: 34040

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRDIKSFLAVIEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHHH
AKQLIPYARQMFSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYILPSFFKYLKEINPAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHSTVDLVICPAREVSEKLLGDSLLWEEKLNLVVAANHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCHHHHHHHCCEEEECCCHHHHHHH
ELLLSELSEYPAILTEKGAALRDKIDNLFEKNQLVLNLGFEMSTIDAIKSIVEYGLGWSY
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILTIKDLELTIPFHAYYLKKRINDRLINDLLSNFKKWINRDDKQE
CCHHHHHCCCCEEEEECEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDIRDIKSFLAVIEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEHHHHH
AKQLIPYARQMFSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYILPSFFKYLKEINPAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHSTVDLVICPAREVSEKLLGDSLLWEEKLNLVVAANHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCHHHHHHHCCEEEECCCHHHHHHH
ELLLSELSEYPAILTEKGAALRDKIDNLFEKNQLVLNLGFEMSTIDAIKSIVEYGLGWSY
HHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILTIKDLELTIPFHAYYLKKRINDRLINDLLSNFKKWINRDDKQE
CCHHHHHCCCCEEEEECEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]