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The map label for this gene is yjcC [H]

Identifier: 54293174

GI number: 54293174

Start: 247938

End: 249026

Strand: Reverse

Name: yjcC [H]

Synonym: lpl0220

Alternate gene names: 54293174

Gene position: 249026-247938 (Counterclockwise)

Preceding gene: 54293175

Following gene: 54293173

Centisome position: 7.44

GC content: 35.17

Gene sequence:

>1089_bases
ATGCCTTGCGAAAAATGCGATTCAGTGACAACCTACCATTTATCGGGAACCTACCAGTTACTCATTTTACCCCCACGAGG
TCATTGCTATTCAAAATTATTAAACCATTTAACCGAAAATAATTTTGATATCAATAAAAGAGACAGTGGAATTATCGAAT
TATTATTTACTGCTGAGAGAGCACAAGACATAGGTCATGCACTGGAGCGATGTTATTCACAAGCGGAACTTGAGGACAGC
AAAGCAGTTTTGTTGCCAATTGATATCGCGGACAGAAACGTAGAGAGAGTACTCAATCATACGCACTCATTAAAAAAAAT
TGTGGGCTTGTGTTTGTCTCAATGGTTGGTTGGACTTATTGAAAATCAGGGGCTATCAACCTTCTGCCAGCCTATTTTGC
ATAATACCACACTCAAACCTTATGGTTTTGAGTGCCTTCTTAGGGGAAAGCAAGATAATAATATACTGCCTTCCTCTGAT
TTATTTGGAGCAGCAAAATCGAGCGACATGCTTTTTTTATTAGATAAGAAAGCGCGAATATGCCACATTGAAAATATGAG
CAAAATTGACATCGCTGACAAAAAAATCTTCATTAATTTTAACCCAACAGCCATTTACGATCCCCTTTTTTGCTTGACAA
CAACGAACCAATCCTTAAAAAAAACATCCATTAAACCTGCACAAATTGTATTTGAAGTCACTGAAAGTGATGAAGTAAAA
GATAAAAAACACTTGTTAAAAATAATAGATTATTACAGAAATCAAGGTTACTGTGTCGCCCTTGACGATTTGGGCTCCGG
TTACAGCTCTTTGAATTTGCTTACTGAGTTACAACCTGATTACGTTAAACTTGATCAAGAATTGATTAGCCAGATTCATA
CAAATGAATTCAAACAAATCATATTGGAAAAAATATGTGAGATGGCTAACAAACTAAAGATAAAAATAATCTGCGAAGGC
ATAGAAACAGAAGACGAGTTACAGATTATAAAAAATTATGCCATAGATTTTTATCAAGGTTTTTTGTTTGAGAAACCTAT
GCCTTACGAAAAAATACCCGACTATATCAAAACAAGCACACAAAAATGA

Upstream 100 bases:

>100_bases
CTCTCCTCTTGCTTGGTAATTACGGTTCCTCCAAGCCTCGCAACGGAAAACATATACTATAATCAAACTAAAGGAAACCC
AGTCAATCAAGGGAAATAGC

Downstream 100 bases:

>100_bases
ATTGGCTATTGGATATATGACAAATGCTTACAAACATTGAAAGAGCAAAACTTCAATTAATTGATGAAACCAGCGATATG
GTCATTATAACCAAAGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MPCEKCDSVTTYHLSGTYQLLILPPRGHCYSKLLNHLTENNFDINKRDSGIIELLFTAERAQDIGHALERCYSQAELEDS
KAVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLIENQGLSTFCQPILHNTTLKPYGFECLLRGKQDNNILPSSD
LFGAAKSSDMLFLLDKKARICHIENMSKIDIADKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVK
DKKHLLKIIDYYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQIILEKICEMANKLKIKIICEG
IETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKTSTQK

Sequences:

>Translated_362_residues
MPCEKCDSVTTYHLSGTYQLLILPPRGHCYSKLLNHLTENNFDINKRDSGIIELLFTAERAQDIGHALERCYSQAELEDS
KAVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLIENQGLSTFCQPILHNTTLKPYGFECLLRGKQDNNILPSSD
LFGAAKSSDMLFLLDKKARICHIENMSKIDIADKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVK
DKKHLLKIIDYYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQIILEKICEMANKLKIKIICEG
IETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKTSTQK
>Mature_361_residues
PCEKCDSVTTYHLSGTYQLLILPPRGHCYSKLLNHLTENNFDINKRDSGIIELLFTAERAQDIGHALERCYSQAELEDSK
AVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLIENQGLSTFCQPILHNTTLKPYGFECLLRGKQDNNILPSSDL
FGAAKSSDMLFLLDKKARICHIENMSKIDIADKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVKD
KKHLLKIIDYYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQIILEKICEMANKLKIKIICEGI
ETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKTSTQK

Specific function: Overexpression reduces biofilm formation [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=30.9322033898305, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=29.2887029288703, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787410, Length=216, Percent_Identity=26.8518518518519, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788849, Length=212, Percent_Identity=30.188679245283, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI87081743, Length=251, Percent_Identity=29.4820717131474, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=24.0963855421687, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=220, Percent_Identity=28.1818181818182, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081921, Length=263, Percent_Identity=24.7148288973384, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=25.2136752136752, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786507, Length=260, Percent_Identity=25.3846153846154, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=25.4166666666667, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87082096, Length=130, Percent_Identity=26.1538461538462, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787055, Length=152, Percent_Identity=30.2631578947368, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 41410; Mature: 41279

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCEKCDSVTTYHLSGTYQLLILPPRGHCYSKLLNHLTENNFDINKRDSGIIELLFTAER
CCCCHHCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHH
AQDIGHALERCYSQAELEDSKAVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLI
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQGLSTFCQPILHNTTLKPYGFECLLRGKQDNNILPSSDLFGAAKSSDMLFLLDKKARI
HCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
CHIENMSKIDIADKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVK
EEECCCCEEEECCCEEEEEECCCCHHCCEEEEECCCCHHHHCCCCCEEEEEEECCCCCHH
DKKHLLKIIDYYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQI
HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ILEKICEMANKLKIKIICEGIETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKTST
HHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCC
QK
CC
>Mature Secondary Structure 
PCEKCDSVTTYHLSGTYQLLILPPRGHCYSKLLNHLTENNFDINKRDSGIIELLFTAER
CCCHHCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHH
AQDIGHALERCYSQAELEDSKAVLLPIDIADRNVERVLNHTHSLKKIVGLCLSQWLVGLI
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENQGLSTFCQPILHNTTLKPYGFECLLRGKQDNNILPSSDLFGAAKSSDMLFLLDKKARI
HCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
CHIENMSKIDIADKKIFINFNPTAIYDPLFCLTTTNQSLKKTSIKPAQIVFEVTESDEVK
EEECCCCEEEECCCEEEEEECCCCHHCCEEEEECCCCHHHHCCCCCEEEEEEECCCCCHH
DKKHLLKIIDYYRNQGYCVALDDLGSGYSSLNLLTELQPDYVKLDQELISQIHTNEFKQI
HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ILEKICEMANKLKIKIICEGIETEDELQIIKNYAIDFYQGFLFEKPMPYEKIPDYIKTST
HHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCC
QK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]