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The map label for this gene is 54293137

Identifier: 54293137

GI number: 54293137

Start: 205401

End: 206120

Strand: Reverse

Name: 54293137

Synonym: lpl0176

Alternate gene names: NA

Gene position: 206120-205401 (Counterclockwise)

Preceding gene: 54293141

Following gene: 54293130

Centisome position: 6.16

GC content: 34.86

Gene sequence:

>720_bases
ATGGTAATTTACATATCATTATATGTTTTTGTCAATCTATTTTTGAATAAGTCTATTCATTTTATCGGGTTATTATTAAT
GGCTGATATGACGTTAAGCGAGAATTTGCAACAACTCATGAGGATACATGGGAATATTTCTGTTAGTGAGTTAGCTCGGT
TAACTGGCATACCTCAACCTACTATTCATCACATTCTAGCTGGCTCTACGAAAAATCCACGGAAAAAAGCATTAGAAGAA
TTATCCCGTTATTTTTCTGTTTCCATCGATGAATTAATTGGCCAAGAACCTTTGCCTGCTGTGATTCCTGATGCTGTTAA
AGAGAACCTGCAGATCAGTACCATACCTGTCATCAAATGGGAGTCATTAAAAGAATGGCCTTCAGGAACAGCCAGAACTC
AAGACACACAAGAAATATTAATTGATAAGAAAATTGACAAAAACTCTTTCGCGTTAATTATGCCCGACACATCAATGGAA
CCTCTTTTTCAACAAAATAGTCTTTTAATCTTTGATTCAGGTAAAGCTCCTAATGATAGGGATTTCGTAATCGTGCATTT
ATCAAAAGAGGGAATAATCGCTTTTAATAGATTATTTATCGAAAACAATACCTTTTATCTGCGACAAGGCTTAGAAGATG
GAAGCCTCAAACTAATAAAATTAGACAAACCTCATGATCGAATTCTAGGGACACTTATTGAGGCACGGATTCAATATTAA

Upstream 100 bases:

>100_bases
CAATTTTATTTGGTGAACTAATCAGCAACATGATATATTGGCGATAATTATTCTATTTAAGATTATTTTAGCAGGTTAAT
TGAATAAATTTATTCAATTA

Downstream 100 bases:

>100_bases
GTTTGTATTCATTAGGAATTTCTTCATGTAATCCAAATATAAATGGATTAAAGTTTGTATGAATATCGTAATGGTCAACT
TGCTCCACCTTCTTTAGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MVIYISLYVFVNLFLNKSIHFIGLLLMADMTLSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTKNPRKKALEE
LSRYFSVSIDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEWPSGTARTQDTQEILIDKKIDKNSFALIMPDTSME
PLFQQNSLLIFDSGKAPNDRDFVIVHLSKEGIIAFNRLFIENNTFYLRQGLEDGSLKLIKLDKPHDRILGTLIEARIQY

Sequences:

>Translated_239_residues
MVIYISLYVFVNLFLNKSIHFIGLLLMADMTLSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTKNPRKKALEE
LSRYFSVSIDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEWPSGTARTQDTQEILIDKKIDKNSFALIMPDTSME
PLFQQNSLLIFDSGKAPNDRDFVIVHLSKEGIIAFNRLFIENNTFYLRQGLEDGSLKLIKLDKPHDRILGTLIEARIQY
>Mature_239_residues
MVIYISLYVFVNLFLNKSIHFIGLLLMADMTLSENLQQLMRIHGNISVSELARLTGIPQPTIHHILAGSTKNPRKKALEE
LSRYFSVSIDELIGQEPLPAVIPDAVKENLQISTIPVIKWESLKEWPSGTARTQDTQEILIDKKIDKNSFALIMPDTSME
PLFQQNSLLIFDSGKAPNDRDFVIVHLSKEGIIAFNRLFIENNTFYLRQGLEDGSLKLIKLDKPHDRILGTLIEARIQY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 27167; Mature: 27167

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIYISLYVFVNLFLNKSIHFIGLLLMADMTLSENLQQLMRIHGNISVSELARLTGIPQP
CEEEEEHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
TIHHILAGSTKNPRKKALEELSRYFSVSIDELIGQEPLPAVIPDAVKENLQISTIPVIKW
HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHCCCEEEEEEEEEC
ESLKEWPSGTARTQDTQEILIDKKIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKAPNDR
CCHHHCCCCCCCCCCHHHHHEECCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCCCCCC
DFVIVHLSKEGIIAFNRLFIENNTFYLRQGLEDGSLKLIKLDKPHDRILGTLIEARIQY
CEEEEEECCCCEEEEEEEEEECCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVIYISLYVFVNLFLNKSIHFIGLLLMADMTLSENLQQLMRIHGNISVSELARLTGIPQP
CEEEEEHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
TIHHILAGSTKNPRKKALEELSRYFSVSIDELIGQEPLPAVIPDAVKENLQISTIPVIKW
HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHCCCEEEEEEEEEC
ESLKEWPSGTARTQDTQEILIDKKIDKNSFALIMPDTSMEPLFQQNSLLIFDSGKAPNDR
CCHHHCCCCCCCCCCHHHHHEECCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCCCCCC
DFVIVHLSKEGIIAFNRLFIENNTFYLRQGLEDGSLKLIKLDKPHDRILGTLIEARIQY
CEEEEEECCCCEEEEEEEEEECCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]