| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is traA [H]
Identifier: 54293130
GI number: 54293130
Start: 198868
End: 201513
Strand: Reverse
Name: traA [H]
Synonym: lpl0169
Alternate gene names: 54293130
Gene position: 201513-198868 (Counterclockwise)
Preceding gene: 54293137
Following gene: 54293127
Centisome position: 6.02
GC content: 41.91
Gene sequence:
>2646_bases ATGGCGATTGCTTTTGCCCAAGTATCCATTCATAGTCGTGCCAAAGGCCACAGTGCCATTGCTGCTAGCAGCTATCGTTC TGGTGCCAAGTTATATGATGCACGCACTGGCATAACACACGATTATTCCAATCGTCATGATGTCATTTACTCTGATATCC TGTTACCCGAAGGGAGCCCTGAAGCATTTTCCGAGCGTGAATTTTTATGGAATAAGGCAGAGCTTGCTGAAAAAAGATGC GATGCTCAAGTGTGTAAGGACATCGTTCTGGCACTTCCCAAAGAGCTGGATTTGGTGCAACAGATTGAGCTGGCAAGACG ATTTGCACAAACTCATTTTGTTGATAAGGGGATTCCTGCTGATATTACAATTCATGATCATCATGATGGCAATCCCCATG CACATATTCTTATTACCACCCGCCGTTTGGAAAAAACAGGTTTTTCAAAATACAAAGCACGCGATCTGAATCCGGCTTTT GCCAAAGGATTTATTATCGAAAAAGATTATTGGGGCGAGCAGTGGCGTGATATGCAAAATGAATATTTTATTGAAAAAAA TCTCGATTTGACAGTTGACCTGAATCACATCATTTCTGAACGGCACCATGGCAAACTAAAAGATACGGACAATCATTACC TACTCACCGAGAAAACCATTCTGCAACAAGCGCGGCAAGAGGTTTTGCTGAATGATATTGATAATGTCATTAACCATATT TCGGCGCAGAACAGCGTATTTACCCGACGTGACGTAGAGCGTTTGGTATTTAAAACCTTTCGGCCAAGCAACACCCCACA GAATTATTTGCACTGGGTTGAGCAAATCATGGGGCATGAGGATCTCATTGAGCTTGGAACAAATGAACGGGGGCAATTGT GTTATACCACACGTCACCAATATATTCAGGAGGCAAAACTTCGGGATGATATCGAAGCTATGATTAAAAACAAAGATGGT ATTGGCGGTAAGGGCATCGACAACATCATCAAAAACTACCAATTGAGTGATGAGCAATTGGAGGCGGTTCGTTACATTAC CGAAGGCTCTCAAATTTCAGTCGTGATAGGTCGTCCGGGTACAGGTAAAAGTTATTTGTTAAAGCCGATTAAAGAGCATT ATGAGCAGCACAACTATCGTGTTATCGGTGCTGCCTTGTCTGGAAAGGTCGCTAAATCCTTGCAAACGGATACAGGCATT GCATCTTCTACCATTGCCTCATTGACTTATAAAATGGCGAACCAACAACTGAAACTCAACAGCAACGATGTTTTGATTAT CGATGAGGCAGGCATGGTGGATTTTTCCAGCATGGCACTGCTGATTCGTGAAGCCAAAAAGGCAGGTTCCAAGGTGATTC TTGTGGGCGATCCGGATCAGTTAAAACCCATTCACAAGGGTGAAATTTTTAGGGGGATAGCCGCTTTAACAGGCTATATC GAGCTTGAGCACATTAAACGTCAAAATGATTTGGGCGACAGGCTTGCCAGTATGAATATGGCTAAGGGCATGATTGCTGA GGCGGTAGACCATTACCATGAAAAGGGAGCAATTGTCTTTTCTGAAACGACTGAGACCGCAGCCCAGAACTTAATCCACG ATTGGCAAGCTGATATTACCAAGAGTAATTTGCAAGATTCTGTCGTGTTGGCATTTACCAGAGCTTCTGTTGGCTATTTA AATGAGCAGGCACGATTGGCATTAAAGGAAAAGCAAATACTTGGACAGGAAGAAATGACTTTTCAAGGGTTTGAAAGACT GTTAAAAATAGCCATCGGGGAGCGGCTGCTATTCCGGCAAAATGATAAAACCCTTGGGGTAAGAAACGGAGATTTAGGCA CCGTTCAATCCATCAAAAAAGACCAGTTTCAAATCAAACTCGACAGCGGCGAACTGCTCACCATTCCAAATAGCTACAAT AAAATAGATTACGGTTATGCGCTGACGGTTCATAAGTCTCAGGGAATGACCGTCAGGCATTCCAAGGTTTTGATTGACAG CAAATACTGGGATCGGCATTTAAGTTTTGTAGCCATGACTCGTCATAAAGACAGCCTTAAAATTTATACGGACTCTATAA ATCATCCAACAATTAAAGAGTTGAAACAGACCTTATCGCGCAGTACCACAAAAGATAACGTCATTGATTGGCCACTGGAT TTTGCAACCCGTGTCGGGTTTAACCCGGATCAGCTCATAGGTCGTGTCCTCAATCATATCGCTGGCGTGGGGCACAAAAT CAAGAGCGCATTTAACTATGTGGTACATTACGAGGCTTATCTTGTCGATTGCCAGCTTCGAGAGTTAAAAAACGATAAGG CCGATTTAAAGGCAAAGGCTAGACTGGCTGCGGATAGACAAGATCGGCCAACTCAAGAAATAACTACAAGTAACTCAAAG GAAAATGTTTACAAAGAGTTACAAAAAAATTATCCGATTCTTGCCCAATATCAAAAATTGCTTGAAAAACGAAGGTATTT AAATGGCTATTTTGCCGAGAAAACAGGTAAACAAATTTCTGAACATGCCCATATATTATCAAAAGATAAGCCATTGATGA ATCAGCTAAATATTCATTTACCCCAGATAGCAAAAAAAATCAGCGAGGTTAGTAAAATTGTAAAAATACAGGACTTGGTT GATTAA
Upstream 100 bases:
>100_bases TTGCTAAATTAGAACTGCGACTCAAAAATGCCTTTATGGATAAGGTATTTTTTCTTTTATTAAAGCAACCGATGGATCAG TTCGATTAGAGCGTGAATTC
Downstream 100 bases:
>100_bases ACGCCAAGTACCGTCGTTTTATCCTTAGAGAGGAGTTAGCAAAACTTTTGGATCGTAGCTCTTAAGCGTCTAACCTCAAC TCTTGTTTTGCAATTTCTGT
Product: hypothetical protein
Products: Hydrolyzed double-stranded DNA [C]
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 880
Protein sequence:
>881_residues MAIAFAQVSIHSRAKGHSAIAASSYRSGAKLYDARTGITHDYSNRHDVIYSDILLPEGSPEAFSEREFLWNKAELAEKRC DAQVCKDIVLALPKELDLVQQIELARRFAQTHFVDKGIPADITIHDHHDGNPHAHILITTRRLEKTGFSKYKARDLNPAF AKGFIIEKDYWGEQWRDMQNEYFIEKNLDLTVDLNHIISERHHGKLKDTDNHYLLTEKTILQQARQEVLLNDIDNVINHI SAQNSVFTRRDVERLVFKTFRPSNTPQNYLHWVEQIMGHEDLIELGTNERGQLCYTTRHQYIQEAKLRDDIEAMIKNKDG IGGKGIDNIIKNYQLSDEQLEAVRYITEGSQISVVIGRPGTGKSYLLKPIKEHYEQHNYRVIGAALSGKVAKSLQTDTGI ASSTIASLTYKMANQQLKLNSNDVLIIDEAGMVDFSSMALLIREAKKAGSKVILVGDPDQLKPIHKGEIFRGIAALTGYI ELEHIKRQNDLGDRLASMNMAKGMIAEAVDHYHEKGAIVFSETTETAAQNLIHDWQADITKSNLQDSVVLAFTRASVGYL NEQARLALKEKQILGQEEMTFQGFERLLKIAIGERLLFRQNDKTLGVRNGDLGTVQSIKKDQFQIKLDSGELLTIPNSYN KIDYGYALTVHKSQGMTVRHSKVLIDSKYWDRHLSFVAMTRHKDSLKIYTDSINHPTIKELKQTLSRSTTKDNVIDWPLD FATRVGFNPDQLIGRVLNHIAGVGHKIKSAFNYVVHYEAYLVDCQLRELKNDKADLKAKARLAADRQDRPTQEITTSNSK ENVYKELQKNYPILAQYQKLLEKRRYLNGYFAEKTGKQISEHAHILSKDKPLMNQLNIHLPQIAKKISEVSKIVKIQDLV D
Sequences:
>Translated_881_residues MAIAFAQVSIHSRAKGHSAIAASSYRSGAKLYDARTGITHDYSNRHDVIYSDILLPEGSPEAFSEREFLWNKAELAEKRC DAQVCKDIVLALPKELDLVQQIELARRFAQTHFVDKGIPADITIHDHHDGNPHAHILITTRRLEKTGFSKYKARDLNPAF AKGFIIEKDYWGEQWRDMQNEYFIEKNLDLTVDLNHIISERHHGKLKDTDNHYLLTEKTILQQARQEVLLNDIDNVINHI SAQNSVFTRRDVERLVFKTFRPSNTPQNYLHWVEQIMGHEDLIELGTNERGQLCYTTRHQYIQEAKLRDDIEAMIKNKDG IGGKGIDNIIKNYQLSDEQLEAVRYITEGSQISVVIGRPGTGKSYLLKPIKEHYEQHNYRVIGAALSGKVAKSLQTDTGI ASSTIASLTYKMANQQLKLNSNDVLIIDEAGMVDFSSMALLIREAKKAGSKVILVGDPDQLKPIHKGEIFRGIAALTGYI ELEHIKRQNDLGDRLASMNMAKGMIAEAVDHYHEKGAIVFSETTETAAQNLIHDWQADITKSNLQDSVVLAFTRASVGYL NEQARLALKEKQILGQEEMTFQGFERLLKIAIGERLLFRQNDKTLGVRNGDLGTVQSIKKDQFQIKLDSGELLTIPNSYN KIDYGYALTVHKSQGMTVRHSKVLIDSKYWDRHLSFVAMTRHKDSLKIYTDSINHPTIKELKQTLSRSTTKDNVIDWPLD FATRVGFNPDQLIGRVLNHIAGVGHKIKSAFNYVVHYEAYLVDCQLRELKNDKADLKAKARLAADRQDRPTQEITTSNSK ENVYKELQKNYPILAQYQKLLEKRRYLNGYFAEKTGKQISEHAHILSKDKPLMNQLNIHLPQIAKKISEVSKIVKIQDLV D >Mature_880_residues AIAFAQVSIHSRAKGHSAIAASSYRSGAKLYDARTGITHDYSNRHDVIYSDILLPEGSPEAFSEREFLWNKAELAEKRCD AQVCKDIVLALPKELDLVQQIELARRFAQTHFVDKGIPADITIHDHHDGNPHAHILITTRRLEKTGFSKYKARDLNPAFA KGFIIEKDYWGEQWRDMQNEYFIEKNLDLTVDLNHIISERHHGKLKDTDNHYLLTEKTILQQARQEVLLNDIDNVINHIS AQNSVFTRRDVERLVFKTFRPSNTPQNYLHWVEQIMGHEDLIELGTNERGQLCYTTRHQYIQEAKLRDDIEAMIKNKDGI GGKGIDNIIKNYQLSDEQLEAVRYITEGSQISVVIGRPGTGKSYLLKPIKEHYEQHNYRVIGAALSGKVAKSLQTDTGIA SSTIASLTYKMANQQLKLNSNDVLIIDEAGMVDFSSMALLIREAKKAGSKVILVGDPDQLKPIHKGEIFRGIAALTGYIE LEHIKRQNDLGDRLASMNMAKGMIAEAVDHYHEKGAIVFSETTETAAQNLIHDWQADITKSNLQDSVVLAFTRASVGYLN EQARLALKEKQILGQEEMTFQGFERLLKIAIGERLLFRQNDKTLGVRNGDLGTVQSIKKDQFQIKLDSGELLTIPNSYNK IDYGYALTVHKSQGMTVRHSKVLIDSKYWDRHLSFVAMTRHKDSLKIYTDSINHPTIKELKQTLSRSTTKDNVIDWPLDF ATRVGFNPDQLIGRVLNHIAGVGHKIKSAFNYVVHYEAYLVDCQLRELKNDKADLKAKARLAADRQDRPTQEITTSNSKE NVYKELQKNYPILAQYQKLLEKRRYLNGYFAEKTGKQISEHAHILSKDKPLMNQLNIHLPQIAKKISEVSKIVKIQDLVD
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mobA/mobL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000606 - InterPro: IPR005053 - InterPro: IPR014136 [H]
Pfam domain/function: PF03389 MobA_MobL; PF01443 Viral_helicase1 [H]
EC number: 3.1.11.5 [C]
Molecular weight: Translated: 100279; Mature: 100147
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIAFAQVSIHSRAKGHSAIAASSYRSGAKLYDARTGITHDYSNRHDVIYSDILLPEGSP CEEEEEEEEHHHCCCCCCHHHHHHCCCCCHHEECCCCCCCCCCCCCCEEEEEEECCCCCC EAFSEREFLWNKAELAEKRCDAQVCKDIVLALPKELDLVQQIELARRFAQTHFVDKGIPA CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC DITIHDHHDGNPHAHILITTRRLEKTGFSKYKARDLNPAFAKGFIIEKDYWGEQWRDMQN EEEEECCCCCCCCEEEEEEEEHHHHCCCCHHHCCCCCHHHHCCEEEECCCCCHHHHCCCC EYFIEKNLDLTVDLNHIISERHHGKLKDTDNHYLLTEKTILQQARQEVLLNDIDNVINHI CEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH SAQNSVFTRRDVERLVFKTFRPSNTPQNYLHWVEQIMGHEDLIELGTNERGQLCYTTRHQ HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEHHHHH YIQEAKLRDDIEAMIKNKDGIGGKGIDNIIKNYQLSDEQLEAVRYITEGSQISVVIGRPG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC TGKSYLLKPIKEHYEQHNYRVIGAALSGKVAKSLQTDTGIASSTIASLTYKMANQQLKLN CCHHHHHHHHHHHHHCCCEEEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC SNDVLIIDEAGMVDFSSMALLIREAKKAGSKVILVGDPDQLKPIHKGEIFRGIAALTGYI CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHH ELEHIKRQNDLGDRLASMNMAKGMIAEAVDHYHEKGAIVFSETTETAAQNLIHDWQADIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH KSNLQDSVVLAFTRASVGYLNEQARLALKEKQILGQEEMTFQGFERLLKIAIGERLLFRQ HCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEEC NDKTLGVRNGDLGTVQSIKKDQFQIKLDSGELLTIPNSYNKIDYGYALTVHKSQGMTVRH CCCEEEECCCCCHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCEEEE SKVLIDSKYWDRHLSFVAMTRHKDSLKIYTDSINHPTIKELKQTLSRSTTKDNVIDWPLD CEEEEECHHHHHHHHEEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEECCHH FATRVGFNPDQLIGRVLNHIAGVGHKIKSAFNYVVHYEAYLVDCQLRELKNDKADLKAKA HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEHHHHHHCCCHHHHHHHH RLAADRQDRPTQEITTSNSKENVYKELQKNYPILAQYQKLLEKRRYLNGYFAEKTGKQIS HHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH EHAHILSKDKPLMNQLNIHLPQIAKKISEVSKIVKIQDLVD HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AIAFAQVSIHSRAKGHSAIAASSYRSGAKLYDARTGITHDYSNRHDVIYSDILLPEGSP EEEEEEEEHHHCCCCCCHHHHHHCCCCCHHEECCCCCCCCCCCCCCEEEEEEECCCCCC EAFSEREFLWNKAELAEKRCDAQVCKDIVLALPKELDLVQQIELARRFAQTHFVDKGIPA CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC DITIHDHHDGNPHAHILITTRRLEKTGFSKYKARDLNPAFAKGFIIEKDYWGEQWRDMQN EEEEECCCCCCCCEEEEEEEEHHHHCCCCHHHCCCCCHHHHCCEEEECCCCCHHHHCCCC EYFIEKNLDLTVDLNHIISERHHGKLKDTDNHYLLTEKTILQQARQEVLLNDIDNVINHI CEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH SAQNSVFTRRDVERLVFKTFRPSNTPQNYLHWVEQIMGHEDLIELGTNERGQLCYTTRHQ HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEHHHHH YIQEAKLRDDIEAMIKNKDGIGGKGIDNIIKNYQLSDEQLEAVRYITEGSQISVVIGRPG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC TGKSYLLKPIKEHYEQHNYRVIGAALSGKVAKSLQTDTGIASSTIASLTYKMANQQLKLN CCHHHHHHHHHHHHHCCCEEEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC SNDVLIIDEAGMVDFSSMALLIREAKKAGSKVILVGDPDQLKPIHKGEIFRGIAALTGYI CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHH ELEHIKRQNDLGDRLASMNMAKGMIAEAVDHYHEKGAIVFSETTETAAQNLIHDWQADIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHH KSNLQDSVVLAFTRASVGYLNEQARLALKEKQILGQEEMTFQGFERLLKIAIGERLLFRQ HCCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEEC NDKTLGVRNGDLGTVQSIKKDQFQIKLDSGELLTIPNSYNKIDYGYALTVHKSQGMTVRH CCCEEEECCCCCHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCEEEE SKVLIDSKYWDRHLSFVAMTRHKDSLKIYTDSINHPTIKELKQTLSRSTTKDNVIDWPLD CEEEEECHHHHHHHHEEEEECCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEECCHH FATRVGFNPDQLIGRVLNHIAGVGHKIKSAFNYVVHYEAYLVDCQLRELKNDKADLKAKA HHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEEEHHHHHHCCCHHHHHHHH RLAADRQDRPTQEITTSNSKENVYKELQKNYPILAQYQKLLEKRRYLNGYFAEKTGKQIS HHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH EHAHILSKDKPLMNQLNIHLPQIAKKISEVSKIVKIQDLVD HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Double-stranded DNA; H2O; DNA [C]
Specific reaction: Double-stranded DNA + H2O = Hydrolyzed double-stranded DNA Protein + DNA = Protein-DNA [C]
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]