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The map label for this gene is lvhD4 [H]

Identifier: 54293123

GI number: 54293123

Start: 192178

End: 194079

Strand: Direct

Name: lvhD4 [H]

Synonym: lpl0162

Alternate gene names: 54293123

Gene position: 192178-194079 (Clockwise)

Preceding gene: 54293122

Following gene: 54293124

Centisome position: 5.74

GC content: 44.32

Gene sequence:

>1902_bases
ATGCGTAATCCACGGGTTATTGCAGTCGCCTTAATCATCGGGCTTGCCATAACCGCCCAAATTGCAGTGCTGTTGACAGG
TATCACCCAGTGGTCAAGTCCATTGGTGCTTATTGATTTAATCAGACATGGATTCTATTGGGAAACCACAATCGCAGGTT
GTATCACCGCTGTTGTGATGGGTTGCATGGCTGGCTTTTTGAAACAGGGATTTTATCGATACGTTTCCCTTTTAATCTTA
AGCACCTTGGTGGGTGTAATGGCCATTATGCTATTGGGATTTGAACTCTATAGCTGGGTTTTTTTAAATGCGTTCCAAAG
TCCTTTCAAAGTAGTGGAGCTGGCTACCCTTCGATATCAAGAACCTGAACTATGGCGAAACTTTCTGACTACTGAAGGGG
TTGCATTCTTCCTGATGTTTTTAGCGCTTGTGATTTACCTGTTTCATTGGCTCAGGCCAGATAACAAGGCACTGGGTAAT
GCCCATTTCTCAAATGGCTTTGAAACCAAACGCGCAGGATTTTTTGAGCGTCAGGAACAAAGCATACTGATTGGTAAAAA
ATACGGTGCGCCTTTGTATTCAAACGGCTTTGAACATGTTCTGGTTTTTGCACCCACCGGAAGCGGTAAAACACGAAGCA
TCGGCATACCCAATCTGTTTCACTACCCCTACTCAGTAGTGTGCAATGATGTAAAACTCACGCTTTTTAAAACAACCTCA
GGATACCGTGAGCGTATGTTAGGGCATCGATGCTTTTGCTGGGCACCTGCTGATGAGAACCGAATCACGCATTGTTACAA
TCCCTTATCCCTAATCTCTGAGGATAAGATTCAACGCCTAACGGACATTCAGCGCATAGCCCATATTCTAATGCCAGATA
ATAAAAAGTCCGACCCCATTTGGCAGCAAGCCTCACGTAAATTATTTAAAGTGGCCGTGCTGTACCTGCTGGATACGCCT
GAAAGACCCACCACCCTTGGCGAAATAAACCGCTTGGTCAAACAGGCCGGATTTGATGATTGGCTGGCCTCAGTCTTGGA
GGAAACCGATCATCTCGACCCGGAGTTTTACCGCAATGGCTATTCCTATTTGAATAATCATGAAAAGACGAGAAGCTCGA
TTCTTGAAACGTTTTCCGGCTACTTTGAATTATTCGATGATCCCACTATTGATGCCGCCACAGCGCATTCTGATTTTGAT
TTACGTCAGTTAAGACGAGAAAAAATAACGATTTACATCGGTTTTACCGATGATGACATGGAACGACTCTCACCGTTGTT
AACACTGTTCTGGCAGCAGCTTATTTCTGTCATGATTAAAAACATCCCCGACCCAGTGGATGAACCCTATCCTCTGTTAT
GCCTGATTGATGAGTTTTCATCATTAGGCCGTATTGAAAGGCTAAGGCGTTCACTTAAATTATTGCGCGAATACCGTGTG
CGTTGTGTACTCATCATGCAATACATAGCCCAAACCTATGAACAATACACCCATGATGAAGCCAAAGCCTTTACCAACAT
TAAAACTAAAATAGCTTTTGCTACCGAAGACATCTTTGATGCGGAGTATGTCAGTAAATTGTTAGGTACACGCACCGTGA
AAGTATCCGCAGGCTCCACCAGTACCCAAACCCAAGGTTATTCCGAGTCTAAAAGCTATAACTATCAGGCCATCCCTTTA
TTAAGACCGGATGAAGTCATGCGTTTACCCGAAGATCAAACCCTGATTATGCGAACAGGTCATGCACCCGTTAAGGCTTC
GCAAATGATTTGGTATCTGGATCCTGAGATGAAGCATTTGGCCTGCGGTCATACCGAAGTACCGCGCCAAATCGTTCAGC
ATCATCCATTTATCCATCGTTCATCAGATAGAACGGCACTGCCCGAAGCATTCGAACTATAA

Upstream 100 bases:

>100_bases
GAGGCTGATATTTACAAAGTGTTGCATGAAGTCATTGATGTCATCGTCCAGTTACAAAAAACATCAGACGGCAGGCGATT
AGTGGAGGTCTATTATAAAC

Downstream 100 bases:

>100_bases
ACCACCACAGGAGAAAACCAAATCAGCCAACAAAACTAAAAGGATGCTCTGAAAAGAGATTATGGATTCATACAGACTTA
ATTGAGGTAAGAATCAGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MRNPRVIAVALIIGLAITAQIAVLLTGITQWSSPLVLIDLIRHGFYWETTIAGCITAVVMGCMAGFLKQGFYRYVSLLIL
STLVGVMAIMLLGFELYSWVFLNAFQSPFKVVELATLRYQEPELWRNFLTTEGVAFFLMFLALVIYLFHWLRPDNKALGN
AHFSNGFETKRAGFFERQEQSILIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFHYPYSVVCNDVKLTLFKTTS
GYRERMLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTP
ERPTTLGEINRLVKQAGFDDWLASVLEETDHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATAHSDFD
LRQLRREKITIYIGFTDDDMERLSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRV
RCVLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPL
LRPDEVMRLPEDQTLIMRTGHAPVKASQMIWYLDPEMKHLACGHTEVPRQIVQHHPFIHRSSDRTALPEAFEL

Sequences:

>Translated_633_residues
MRNPRVIAVALIIGLAITAQIAVLLTGITQWSSPLVLIDLIRHGFYWETTIAGCITAVVMGCMAGFLKQGFYRYVSLLIL
STLVGVMAIMLLGFELYSWVFLNAFQSPFKVVELATLRYQEPELWRNFLTTEGVAFFLMFLALVIYLFHWLRPDNKALGN
AHFSNGFETKRAGFFERQEQSILIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFHYPYSVVCNDVKLTLFKTTS
GYRERMLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTP
ERPTTLGEINRLVKQAGFDDWLASVLEETDHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATAHSDFD
LRQLRREKITIYIGFTDDDMERLSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRV
RCVLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPL
LRPDEVMRLPEDQTLIMRTGHAPVKASQMIWYLDPEMKHLACGHTEVPRQIVQHHPFIHRSSDRTALPEAFEL
>Mature_633_residues
MRNPRVIAVALIIGLAITAQIAVLLTGITQWSSPLVLIDLIRHGFYWETTIAGCITAVVMGCMAGFLKQGFYRYVSLLIL
STLVGVMAIMLLGFELYSWVFLNAFQSPFKVVELATLRYQEPELWRNFLTTEGVAFFLMFLALVIYLFHWLRPDNKALGN
AHFSNGFETKRAGFFERQEQSILIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFHYPYSVVCNDVKLTLFKTTS
GYRERMLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPIWQQASRKLFKVAVLYLLDTP
ERPTTLGEINRLVKQAGFDDWLASVLEETDHLDPEFYRNGYSYLNNHEKTRSSILETFSGYFELFDDPTIDAATAHSDFD
LRQLRREKITIYIGFTDDDMERLSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRV
RCVLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGSTSTQTQGYSESKSYNYQAIPL
LRPDEVMRLPEDQTLIMRTGHAPVKASQMIWYLDPEMKHLACGHTEVPRQIVQHHPFIHRSSDRTALPEAFEL

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 72770; Mature: 72770

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNPRVIAVALIIGLAITAQIAVLLTGITQWSSPLVLIDLIRHGFYWETTIAGCITAVVM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GCMAGFLKQGFYRYVSLLILSTLVGVMAIMLLGFELYSWVFLNAFQSPFKVVELATLRYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
EPELWRNFLTTEGVAFFLMFLALVIYLFHWLRPDNKALGNAHFSNGFETKRAGFFERQEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHCCC
SILIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFHYPYSVVCNDVKLTLFKTTS
CEEEECCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCHHHCCHHHEECCEEEEEEECCC
GYRERMLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPI
HHHHHHHCCEEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
WQQASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWLASVLEETDHLDPEFYRNG
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCH
YSYLNNHEKTRSSILETFSGYFELFDDPTIDAATAHSDFDLRQLRREKITIYIGFTDDDM
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEEEECCCHH
ERLSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RCVLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEECCCC
STQTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHAPVKASQMIWYLDPEMKHL
CCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCHHHH
ACGHTEVPRQIVQHHPFIHRSSDRTALPEAFEL
HCCCCHHHHHHHHHCCCEECCCCCCCCCHHHCC
>Mature Secondary Structure
MRNPRVIAVALIIGLAITAQIAVLLTGITQWSSPLVLIDLIRHGFYWETTIAGCITAVVM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
GCMAGFLKQGFYRYVSLLILSTLVGVMAIMLLGFELYSWVFLNAFQSPFKVVELATLRYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
EPELWRNFLTTEGVAFFLMFLALVIYLFHWLRPDNKALGNAHFSNGFETKRAGFFERQEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHHCCC
SILIGKKYGAPLYSNGFEHVLVFAPTGSGKTRSIGIPNLFHYPYSVVCNDVKLTLFKTTS
CEEEECCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCHHHCCHHHEECCEEEEEEECCC
GYRERMLGHRCFCWAPADENRITHCYNPLSLISEDKIQRLTDIQRIAHILMPDNKKSDPI
HHHHHHHCCEEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
WQQASRKLFKVAVLYLLDTPERPTTLGEINRLVKQAGFDDWLASVLEETDHLDPEFYRNG
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCH
YSYLNNHEKTRSSILETFSGYFELFDDPTIDAATAHSDFDLRQLRREKITIYIGFTDDDM
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEEEECCCHH
ERLSPLLTLFWQQLISVMIKNIPDPVDEPYPLLCLIDEFSSLGRIERLRRSLKLLREYRV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
RCVLIMQYIAQTYEQYTHDEAKAFTNIKTKIAFATEDIFDAEYVSKLLGTRTVKVSAGST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCEEEEECCCC
STQTQGYSESKSYNYQAIPLLRPDEVMRLPEDQTLIMRTGHAPVKASQMIWYLDPEMKHL
CCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCHHHH
ACGHTEVPRQIVQHHPFIHRSSDRTALPEAFEL
HCCCCHHHHHHHHHCCCEECCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]