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The map label for this gene is rnpA

Identifier: 54027646

GI number: 54027646

Start: 6019988

End: 6020458

Strand: Reverse

Name: rnpA

Synonym: nfa56720

Alternate gene names: 54027646

Gene position: 6020458-6019988 (Counterclockwise)

Preceding gene: 54027647

Following gene: 54027645

Centisome position: 99.99

GC content: 70.91

Gene sequence:

>471_bases
GTGTTGCCTGAGCCGTATCGGTTGCATCATCGTGCCGACTTCTCCCGGACGGTGCGCCGCGGCCAGCGAATCGGGAGGCG
AGATCTCGTCGTACACGCATTCGTGCACACCTACGACGAGCTCGCGCACGCGACAGAACGACACGGCGACCCGGTAGCCG
CCGGGTCGTTCGTTCGCGTCGGCGGACCGAGGTTCGGATTGATCGTCAGCAAGGCGGTGGGCTCCGCGGTGGTTCGCCAT
CGGGTGGCCCGCCGCCTGCGTCATATGTGCGCCACCCTCGTCGACGAGGTGCCCGCGGATGCCGATGTCGTGATCCGCGC
ACTGCCCGGCGCGGCGACCGCCGACAGTGCCGAACTCGCCCGGCAGGTGCGCAGCGGACTGCGCAAACTCGGCGTCACCC
CCGGCGGTGGTCGCTCCCCCGCGCCACGTGCGCACTCCGGTGCGCGGCCACGGACGGACGCCCGGTCGTGA

Upstream 100 bases:

>100_bases
TCTCCGGATGCGCACCCGTGCCGGTCGCGCCATCGTCTCGGCGCGCCGCCGTAAGGGCCGCGCTACCCTCACTGCCTGAT
CCTCGCCCTCGGACGCTCGG

Downstream 100 bases:

>100_bases
GATCCGCAGCTGCCGCCCTCCACCGGTTGCCCGCGCGGGCGCTGATCTTCCTGATCGAGCTCTACCGGACCTATGTCTCC
CCCACCCGGATGCCGGTGTG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLPEPYRLHHRADFSRTVRRGQRIGRRDLVVHAFVHTYDELAHATERHGDPVAAGSFVRVGGPRFGLIVSKAVGSAVVRH
RVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELARQVRSGLRKLGVTPGGGRSPAPRAHSGARPRTDARS

Sequences:

>Translated_156_residues
MLPEPYRLHHRADFSRTVRRGQRIGRRDLVVHAFVHTYDELAHATERHGDPVAAGSFVRVGGPRFGLIVSKAVGSAVVRH
RVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELARQVRSGLRKLGVTPGGGRSPAPRAHSGARPRTDARS
>Mature_156_residues
MLPEPYRLHHRADFSRTVRRGQRIGRRDLVVHAFVHTYDELAHATERHGDPVAAGSFVRVGGPRFGLIVSKAVGSAVVRH
RVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELARQVRSGLRKLGVTPGGGRSPAPRAHSGARPRTDARS

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_NOCFA (Q5YMR7)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121888.1
- ProteinModelPortal:   Q5YMR7
- SMR:   Q5YMR7
- GeneID:   3111465
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa56720
- NMPDR:   fig|247156.1.peg.5452
- HOGENOM:   HBG728160
- OMA:   REATSAH
- ProtClustDB:   PRK03459
- BioCyc:   NFAR247156:NFA56720-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 16883; Mature: 16883

Theoretical pI: Translated: 12.10; Mature: 12.10

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPEPYRLHHRADFSRTVRRGQRIGRRDLVVHAFVHTYDELAHATERHGDPVAAGSFVRV
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
GGPRFGLIVSKAVGSAVVRHRVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHH
RQVRSGLRKLGVTPGGGRSPAPRAHSGARPRTDARS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPEPYRLHHRADFSRTVRRGQRIGRRDLVVHAFVHTYDELAHATERHGDPVAAGSFVRV
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
GGPRFGLIVSKAVGSAVVRHRVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHH
RQVRSGLRKLGVTPGGGRSPAPRAHSGARPRTDARS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA