Click here to switch to the map view.

The map label for this gene is ydhO [C]

Identifier: 54027569

GI number: 54027569

Start: 5934155

End: 5934805

Strand: Reverse

Name: ydhO [C]

Synonym: nfa55950

Alternate gene names: 54027569

Gene position: 5934805-5934155 (Counterclockwise)

Preceding gene: 54027570

Following gene: 54027568

Centisome position: 98.56

GC content: 69.74

Gene sequence:

>651_bases
GTGGGTAAACACAGCTTGCAGCGGGAATCGCGGCTGCCGAATTCCGTGAAGGGTGCTCTCGTCATGGGCGCAGTTGCTGC
GACCGGCGCGATGCCCGCTGTTCCCGCGATGGCCGCCACGGTCAACATTCCCGGCCTCGGCGATTTCGACGTCCCGGTGC
CGCAGGAGTTCGAACAGCCCGTCCAGCAGCTCAACCAGCAGCTGCAGCAGGCCCTGGCCGCCCCGCAGGGTGGCGTGCAG
CAGGCGCCGCTGGCCGCTCCCCAGTTCCCCAGCTTCCAGATCCCGGCGCCGTTCCAGCAGACGACGCCCGGTGACATCGC
CCTCGACGCCGCCAAGACCAAGGTCGGCGCCATGTACTCGTGGGGCGCGGCGGGCCCGTCCACCTTCGACTGCTCCGGCC
TGGTGAAGTGGGCCTACCGGCAGGCGGGTATCGAGCTCCCCCGCACCAGCTTCGAACAGTCGCATGTCGGCGCCCCGGTC
GCCTTCGAAGACCTGCGCCCCGGTGACATCGTGGTCACCAACGGCGGCGGCCATGTCGGCCTGTACGCCGGTGACGGCAA
GCTCCTCAACGCGGTGCAGTCCGGTCAGCCGGTGTCCTACACCCCGCTGCGCCCCGACATGGTCGTCACCGCGCGCCGCA
TCGCCGACTAA

Upstream 100 bases:

>100_bases
GCCAGGTCGACAGCCTGCGCGGTAGGGCCGATCTTCCCGGCCCGAACCCGTCGGGTGAACCGGTCGGCGGGAGAGCAAGG
AAGATCGGAGACTCAGCTCG

Downstream 100 bases:

>100_bases
TCTGGATCGGGTGCCGCACCGAGAACACGACGCACCGACGCAGGCCAGGGTCGATTCCTGGACGTGGTCGGTGCGGCTGT
TCAAGACCCGGTCCGCGGCA

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MGKHSLQRESRLPNSVKGALVMGAVAATGAMPAVPAMAATVNIPGLGDFDVPVPQEFEQPVQQLNQQLQQALAAPQGGVQ
QAPLAAPQFPSFQIPAPFQQTTPGDIALDAAKTKVGAMYSWGAAGPSTFDCSGLVKWAYRQAGIELPRTSFEQSHVGAPV
AFEDLRPGDIVVTNGGGHVGLYAGDGKLLNAVQSGQPVSYTPLRPDMVVTARRIAD

Sequences:

>Translated_216_residues
MGKHSLQRESRLPNSVKGALVMGAVAATGAMPAVPAMAATVNIPGLGDFDVPVPQEFEQPVQQLNQQLQQALAAPQGGVQ
QAPLAAPQFPSFQIPAPFQQTTPGDIALDAAKTKVGAMYSWGAAGPSTFDCSGLVKWAYRQAGIELPRTSFEQSHVGAPV
AFEDLRPGDIVVTNGGGHVGLYAGDGKLLNAVQSGQPVSYTPLRPDMVVTARRIAD
>Mature_215_residues
GKHSLQRESRLPNSVKGALVMGAVAATGAMPAVPAMAATVNIPGLGDFDVPVPQEFEQPVQQLNQQLQQALAAPQGGVQQ
APLAAPQFPSFQIPAPFQQTTPGDIALDAAKTKVGAMYSWGAAGPSTFDCSGLVKWAYRQAGIELPRTSFEQSHVGAPVA
FEDLRPGDIVVTNGGGHVGLYAGDGKLLNAVQSGQPVSYTPLRPDMVVTARRIAD

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=133, Percent_Identity=37.593984962406, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788501, Length=83, Percent_Identity=38.5542168674699, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786421, Length=123, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 22525; Mature: 22394

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKHSLQRESRLPNSVKGALVMGAVAATGAMPAVPAMAATVNIPGLGDFDVPVPQEFEQP
CCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCCCCCHHHHHH
VQQLNQQLQQALAAPQGGVQQAPLAAPQFPSFQIPAPFQQTTPGDIALDAAKTKVGAMYS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCEEE
WGAAGPSTFDCSGLVKWAYRQAGIELPRTSFEQSHVGAPVAFEDLRPGDIVVTNGGGHVG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEECCCCCCCCEEEECCCCEEE
LYAGDGKLLNAVQSGQPVSYTPLRPDMVVTARRIAD
EEECCCHHHHHHHCCCCCEECCCCCCHHHHHHHHCC
>Mature Secondary Structure 
GKHSLQRESRLPNSVKGALVMGAVAATGAMPAVPAMAATVNIPGLGDFDVPVPQEFEQP
CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCCCCCHHHHHH
VQQLNQQLQQALAAPQGGVQQAPLAAPQFPSFQIPAPFQQTTPGDIALDAAKTKVGAMYS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCEEE
WGAAGPSTFDCSGLVKWAYRQAGIELPRTSFEQSHVGAPVAFEDLRPGDIVVTNGGGHVG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEECCCCCCCCEEEECCCCEEE
LYAGDGKLLNAVQSGQPVSYTPLRPDMVVTARRIAD
EEECCCHHHHHHHCCCCCEECCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA