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The map label for this gene is 54027497

Identifier: 54027497

GI number: 54027497

Start: 5848974

End: 5849384

Strand: Reverse

Name: 54027497

Synonym: nfa55230

Alternate gene names: NA

Gene position: 5849384-5848974 (Counterclockwise)

Preceding gene: 54027499

Following gene: 54027490

Centisome position: 97.15

GC content: 73.72

Gene sequence:

>411_bases
GTGGTGTTCGTCGTCGCCCTCGTCCTGTTCGTGCTGGCCCTGGTGGCCATCGCAACCGGCCTGCTCGGCCTGACAGGCAG
GCTGCCGCGCAACCGGTTCGTCGGGGTGCACACCGAAGCCGCTCTCAGCTCCGAGCAGACCTTCCGCATCGCCAACCGTG
TCGCCGCCCCCACCTCGGTGGGTGCGGGCGCGCTGCTGTTCGCCGGTGGCCTGGTGGTCCTGGCCGCGGGCACCCCGATC
GCCCTCGTGGTCGCGTTCGTCGCCGCGGTGATCGCCCTGTTCACCCTGGGTGCGGGCGCGGATGCGGCAGGCCGGGCCAT
CGCCGATCTGGTCCCCGCACAGCCGAGCGGCGCCTGCGGGCAGTCCTGTGGCGCGTGCTCGCTGCGGGAAGCCTGCGGCC
CCGCCCACTGA

Upstream 100 bases:

>100_bases
TTGTTTCTCGCCGATATCCCGACAGACGTCGGCTATCAGGGTAGAACGTGGGCTCGACCGGACCGGCAGTCGGGCCGTAC
CGGCGCTGCGATACCCTGAC

Downstream 100 bases:

>100_bases
CCCGGCTCGCCGACCCCGCCCCCGGTCCCGGGCCGGTGTGATCGCCACCTCTTGCCGGTCCGCGACCCGCACGTGCTGAC
GTTCCCCGGTACGCTGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MVFVVALVLFVLALVAIATGLLGLTGRLPRNRFVGVHTEAALSSEQTFRIANRVAAPTSVGAGALLFAGGLVVLAAGTPI
ALVVAFVAAVIALFTLGAGADAAGRAIADLVPAQPSGACGQSCGACSLREACGPAH

Sequences:

>Translated_136_residues
MVFVVALVLFVLALVAIATGLLGLTGRLPRNRFVGVHTEAALSSEQTFRIANRVAAPTSVGAGALLFAGGLVVLAAGTPI
ALVVAFVAAVIALFTLGAGADAAGRAIADLVPAQPSGACGQSCGACSLREACGPAH
>Mature_136_residues
MVFVVALVLFVLALVAIATGLLGLTGRLPRNRFVGVHTEAALSSEQTFRIANRVAAPTSVGAGALLFAGGLVVLAAGTPI
ALVVAFVAAVIALFTLGAGADAAGRAIADLVPAQPSGACGQSCGACSLREACGPAH

Specific function: Unknown

COG id: COG5658

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13336; Mature: 13336

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFVVALVLFVLALVAIATGLLGLTGRLPRNRFVGVHTEAALSSEQTFRIANRVAAPTSV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCHHHHHHHHHHHCCCCCC
GAGALLFAGGLVVLAAGTPIALVVAFVAAVIALFTLGAGADAAGRAIADLVPAQPSGACG
CCHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
QSCGACSLREACGPAH
CCCCCCCHHHHCCCCC
>Mature Secondary Structure
MVFVVALVLFVLALVAIATGLLGLTGRLPRNRFVGVHTEAALSSEQTFRIANRVAAPTSV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCHHHHHHHHHHHCCCCCC
GAGALLFAGGLVVLAAGTPIALVVAFVAAVIALFTLGAGADAAGRAIADLVPAQPSGACG
CCHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
QSCGACSLREACGPAH
CCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA