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The map label for this gene is 54027288

Identifier: 54027288

GI number: 54027288

Start: 5615713

End: 5616354

Strand: Reverse

Name: 54027288

Synonym: nfa53140

Alternate gene names: NA

Gene position: 5616354-5615713 (Counterclockwise)

Preceding gene: 54027292

Following gene: 54027274

Centisome position: 93.28

GC content: 75.08

Gene sequence:

>642_bases
GTGACCCGTGAGGAAGCGCCCGCCCCGCCCGCCACGGAATCGATCGCCGCCGACGATCGCCGCGCACTGCTCGATGCGGC
CACGGAACTGTTTGCCGATCAGGGGTATTCACGCACCACCGCGGCGCAGATCTGCGGGCGCGCCGGGGTGGCGCCGGAGC
TGTTCGACGCCGCCTTCGACGGTACCGCCGACTGCTACCTGGTGTTGCTCGAATCGGCCGCGGCCAGGCTCAGGGACCGG
GTGAGCACGGCCGCCCTCCGCTACGCCGACCGGCACTTCACCGAACGGGGCGCGGTGGTGGTCGCCGCCTTCGTCGGCGC
GCTCGCGGAGGACCCGCGGCTGGCGAGGGTGGCGTTCGGGGAACCCGCGGAGGTCTCGCCCGCGGTGCGGCGCCAGCGGC
GGGTGCACCGGCGGTGGGCGGCGGCGTTCCTGGACACCCAGTGGCCGCCCGAACCCGAGGCGGGGGAGCGGGCGGCGCGG
CGGCGCTTCGCGGTCGCGATGGCCACCATCGGCGGGATGTTCGAGCTGGTCGGGGACTGGACCCGGCACCGCGAGGAGTC
CGGGGCCGACGCCCAGGCGCTGGTCGACGACCTCACCGAGTTCGTCGGCGTGGTGTACACCGGGCGCGTCCACCGACGCT
GA

Upstream 100 bases:

>100_bases
AGATTCGTGACGATCTTCTGCATGGTGTGCTCCTGCCGTCGGGTGTGCTCGTAGTACGGACTGCGCGGCGCGGCGGAACT
CATCGCTATTGTCGGTTTCC

Downstream 100 bases:

>100_bases
ACCCGGCGCTCACTTGCGCAGCGCGACGGGCTCGCGGTCGACGGCCGGGTCCGGTGGCGCGGGTGCTTCCTGCTCGGTGA
GCCCGAAGCGCGCGTGCAGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTREEAPAPPATESIAADDRRALLDAATELFADQGYSRTTAAQICGRAGVAPELFDAAFDGTADCYLVLLESAAARLRDR
VSTAALRYADRHFTERGAVVVAAFVGALAEDPRLARVAFGEPAEVSPAVRRQRRVHRRWAAAFLDTQWPPEPEAGERAAR
RRFAVAMATIGGMFELVGDWTRHREESGADAQALVDDLTEFVGVVYTGRVHRR

Sequences:

>Translated_213_residues
MTREEAPAPPATESIAADDRRALLDAATELFADQGYSRTTAAQICGRAGVAPELFDAAFDGTADCYLVLLESAAARLRDR
VSTAALRYADRHFTERGAVVVAAFVGALAEDPRLARVAFGEPAEVSPAVRRQRRVHRRWAAAFLDTQWPPEPEAGERAAR
RRFAVAMATIGGMFELVGDWTRHREESGADAQALVDDLTEFVGVVYTGRVHRR
>Mature_212_residues
TREEAPAPPATESIAADDRRALLDAATELFADQGYSRTTAAQICGRAGVAPELFDAAFDGTADCYLVLLESAAARLRDRV
STAALRYADRHFTERGAVVVAAFVGALAEDPRLARVAFGEPAEVSPAVRRQRRVHRRWAAAFLDTQWPPEPEAGERAARR
RFAVAMATIGGMFELVGDWTRHREESGADAQALVDDLTEFVGVVYTGRVHRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23269; Mature: 23138

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREEAPAPPATESIAADDRRALLDAATELFADQGYSRTTAAQICGRAGVAPELFDAAFD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCC
GTADCYLVLLESAAARLRDRVSTAALRYADRHFTERGAVVVAAFVGALAEDPRLARVAFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECC
EPAEVSPAVRRQRRVHRRWAAAFLDTQWPPEPEAGERAARRRFAVAMATIGGMFELVGDW
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRHREESGADAQALVDDLTEFVGVVYTGRVHRR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TREEAPAPPATESIAADDRRALLDAATELFADQGYSRTTAAQICGRAGVAPELFDAAFD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCC
GTADCYLVLLESAAARLRDRVSTAALRYADRHFTERGAVVVAAFVGALAEDPRLARVAFG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECC
EPAEVSPAVRRQRRVHRRWAAAFLDTQWPPEPEAGERAARRRFAVAMATIGGMFELVGDW
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRHREESGADAQALVDDLTEFVGVVYTGRVHRR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA