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The map label for this gene is psd

Identifier: 54027255

GI number: 54027255

Start: 5582307

End: 5583020

Strand: Reverse

Name: psd

Synonym: nfa52810

Alternate gene names: 54027255

Gene position: 5583020-5582307 (Counterclockwise)

Preceding gene: 54027257

Following gene: 54027254

Centisome position: 92.72

GC content: 73.67

Gene sequence:

>714_bases
GTGGCACGCCGTCCCACACCGCCCGGCACGCCCGAGACCACCGGAGTCGGCCACGTCGTCGATCTGGTGCGGGCCTCGAT
CCCCCCGCTGCATCCCGCCGGGCTGCCCTTCGTCGCCGTGCCGCTGGCCGTCGCGGTCGCGGCGGGCAAGCGCAAGTGGG
TGCGCCGGGCCGGACTGGCGACCGCCGCCGCCTGCGCGGGCTTCTTCCGCCACCCCAACCGGGTGCCGCCGAACCGGCCG
GGCGTGGTCGTCGCCCCCGCCGACGGTGAGATCGCGCTCGTCGACACCGCCTCCCCGCCCGCCGAGCTGGGGCTGGGCGA
TCAGCCGCTGCCGCGGGTGAGCATCTTCCTGTCCGTGCTCGACGTGCACGTCCAGCGCACCCCGGTCTCCGGTGTGGTGC
GCGAGGTGCGGCATCAGTCCGGCCAGTTCCGCTCGGCGGATCTGCCGGAGGCCAGCGCGGTCAACGAGCGCAACAGCATG
CTGCTCGAGACGCAGTCCGGGCAGCAGATCGTGGTGGTGCAGATCGCCGGTCTGCTGGCGCGGCGCATCGTCTGCGACGC
CCGGGTGGGCGACGTGCTCACCATCGGCGACACCTACGGCCTGATCCGCTTCGGTTCCCGCGTGGACACCTACTTCCCGG
TGGGCACCGAACTCCTGGTGCAGCCCGGCCAGCGCACCATCGGGGGCGAGACCGTCCTCGCGACGTTGTCGTGA

Upstream 100 bases:

>100_bases
AAGGTGTGGTGGCTTGCGCCGGACCTATCGTGGAGGGGCGCAGGCCGACCCCATCGAGCCGCGACCGAGCACCGAAGTAC
GAGCACTGAAAGAGGAATCT

Downstream 100 bases:

>100_bases
CGGGAGCGCTGTCGTGACGGAGGCGTTGTGGTGATGGAAGAGCTGTCGTGATGGAAGAGCTGTCGTGATGGAAGCGGCGG
TGCCGTCCCCGAGGCGCAGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MARRPTPPGTPETTGVGHVVDLVRASIPPLHPAGLPFVAVPLAVAVAAGKRKWVRRAGLATAAACAGFFRHPNRVPPNRP
GVVVAPADGEIALVDTASPPAELGLGDQPLPRVSIFLSVLDVHVQRTPVSGVVREVRHQSGQFRSADLPEASAVNERNSM
LLETQSGQQIVVVQIAGLLARRIVCDARVGDVLTIGDTYGLIRFGSRVDTYFPVGTELLVQPGQRTIGGETVLATLS

Sequences:

>Translated_237_residues
MARRPTPPGTPETTGVGHVVDLVRASIPPLHPAGLPFVAVPLAVAVAAGKRKWVRRAGLATAAACAGFFRHPNRVPPNRP
GVVVAPADGEIALVDTASPPAELGLGDQPLPRVSIFLSVLDVHVQRTPVSGVVREVRHQSGQFRSADLPEASAVNERNSM
LLETQSGQQIVVVQIAGLLARRIVCDARVGDVLTIGDTYGLIRFGSRVDTYFPVGTELLVQPGQRTIGGETVLATLS
>Mature_236_residues
ARRPTPPGTPETTGVGHVVDLVRASIPPLHPAGLPFVAVPLAVAVAAGKRKWVRRAGLATAAACAGFFRHPNRVPPNRPG
VVVAPADGEIALVDTASPPAELGLGDQPLPRVSIFLSVLDVHVQRTPVSGVVREVRHQSGQFRSADLPEASAVNERNSML
LETQSGQQIVVVQIAGLLARRIVCDARVGDVLTIGDTYGLIRFGSRVDTYFPVGTELLVQPGQRTIGGETVLATLS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_NOCFA (Q5YNV8)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121497.1
- GeneID:   3111400
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa52810
- NMPDR:   fig|247156.1.peg.5077
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   NFAR247156:NFA52810-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24940; Mature: 24809

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRPTPPGTPETTGVGHVVDLVRASIPPLHPAGLPFVAVPLAVAVAAGKRKWVRRAGLA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
TAAACAGFFRHPNRVPPNRPGVVVAPADGEIALVDTASPPAELGLGDQPLPRVSIFLSVL
HHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHH
DVHVQRTPVSGVVREVRHQSGQFRSADLPEASAVNERNSMLLETQSGQQIVVVQIAGLLA
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCCEEEEHHHHHHHH
RRIVCDARVGDVLTIGDTYGLIRFGSRVDTYFPVGTELLVQPGQRTIGGETVLATLS
HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHEEECCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
ARRPTPPGTPETTGVGHVVDLVRASIPPLHPAGLPFVAVPLAVAVAAGKRKWVRRAGLA
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
TAAACAGFFRHPNRVPPNRPGVVVAPADGEIALVDTASPPAELGLGDQPLPRVSIFLSVL
HHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHH
DVHVQRTPVSGVVREVRHQSGQFRSADLPEASAVNERNSMLLETQSGQQIVVVQIAGLLA
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEECCCCEEEEHHHHHHHH
RRIVCDARVGDVLTIGDTYGLIRFGSRVDTYFPVGTELLVQPGQRTIGGETVLATLS
HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHEEECCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA