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The map label for this gene is xyn11A [H]

Identifier: 54027238

GI number: 54027238

Start: 5563881

End: 5564585

Strand: Reverse

Name: xyn11A [H]

Synonym: nfa52640

Alternate gene names: 54027238

Gene position: 5564585-5563881 (Counterclockwise)

Preceding gene: 54027239

Following gene: 54027234

Centisome position: 92.42

GC content: 69.79

Gene sequence:

>705_bases
ATGCGTCGCTCATGGATCATCGGGACCGCCGCCGGACTCGTGCTGGTGCTCGTGGTGCTGATCGGGGGATACCGCTTGGT
CGGTTCGCGCACCTACCAGGTGGCCGGCCGGTTGGTCGACCGCGTGGACACCACCGAGAAGCTGGTCGCCCTCACCCTCG
ACGACGGGCCGAGCGAGCGCGCCACCGAAGTCCTGCGCGTTCTCGCCGAGCTCGACGTCCGCGCCACCTTCTACCTCAAC
GGCCGCGATCTCGACGCCCACCCCGAGCTCGGCCGCGCGATCGCCGCCGCGGGCCACGAGCTGGGCAACCACACCTACAG
CCACCGCCGCATGCTCTTCGTTTCCCCCGCCACCGTGCGCGAGGAGGTCGAACGCACCGACACCGCCATCCGCGCCACCG
GCTACCAGGGCCCGGTCACCTTCCGTCCGCCCTACGGCAAGAAACTCTGGTCCCTGCCGCGCTACCTCGCCGACCACGAC
CGCACCACGATCATGTGGGACGTGGAACCCGACTCCGGCACCACCGCCGACGCCGCCACCATCGCCGAGCAAGCCGTGCG
CGAAACCCGCCCCGGCTCGATCATCCTGCTGCACGTCATGTACGGCAACGCCGCCGAATCCCTCGCCGCCATCCCCGGTA
TCGTCAGCGACCTGCGCGCCCAGGGCTACCGTTTCGTCACCGTCTCCGACCTCATCACCCACTGA

Upstream 100 bases:

>100_bases
GGCGCCGTCGTCGTAGCAGGCGGGTTGCCCCACCGCGCGGTGCCGGATCGAATCGCGCTGGCGCGCTGCCGTTCCGGTGC
CGGTGTGTTTGACTGGCGCG

Downstream 100 bases:

>100_bases
CCCGTTCCAGGAGGCCGTAGGCGCGGTGCGGGGTGAGGCGGGCGAGGACGCGGCGGTCGGCGACCATGGCGCGGCGGTAG
TCGGTCCAGTCGGGGTGTTC

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase 11A; Xylanase xyn11A; Xylanase xynT; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRRSWIIGTAAGLVLVLVVLIGGYRLVGSRTYQVAGRLVDRVDTTEKLVALTLDDGPSERATEVLRVLAELDVRATFYLN
GRDLDAHPELGRAIAAAGHELGNHTYSHRRMLFVSPATVREEVERTDTAIRATGYQGPVTFRPPYGKKLWSLPRYLADHD
RTTIMWDVEPDSGTTADAATIAEQAVRETRPGSIILLHVMYGNAAESLAAIPGIVSDLRAQGYRFVTVSDLITH

Sequences:

>Translated_234_residues
MRRSWIIGTAAGLVLVLVVLIGGYRLVGSRTYQVAGRLVDRVDTTEKLVALTLDDGPSERATEVLRVLAELDVRATFYLN
GRDLDAHPELGRAIAAAGHELGNHTYSHRRMLFVSPATVREEVERTDTAIRATGYQGPVTFRPPYGKKLWSLPRYLADHD
RTTIMWDVEPDSGTTADAATIAEQAVRETRPGSIILLHVMYGNAAESLAAIPGIVSDLRAQGYRFVTVSDLITH
>Mature_234_residues
MRRSWIIGTAAGLVLVLVVLIGGYRLVGSRTYQVAGRLVDRVDTTEKLVALTLDDGPSERATEVLRVLAELDVRATFYLN
GRDLDAHPELGRAIAAAGHELGNHTYSHRRMLFVSPATVREEVERTDTAIRATGYQGPVTFRPPYGKKLWSLPRYLADHD
RTTIMWDVEPDSGTTADAATIAEQAVRETRPGSIILLHVMYGNAAESLAAIPGIVSDLRAQGYRFVTVSDLITH

Specific function: Endo-acting xylanase which specifically cleaves internal linkages on the xylan backbone, releasing xylooligosaccharides. Is also probably able, via its C-terminal domain, to remove acetyl groups from acetylated xylan, and thus it is probably capable of hy

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=107, Percent_Identity=37.3831775700935, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323338, Length=131, Percent_Identity=34.3511450381679, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008985
- InterPro:   IPR008979
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509 [H]

Pfam domain/function: PF03422 CBM_6; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 25708; Mature: 25708

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSWIIGTAAGLVLVLVVLIGGYRLVGSRTYQVAGRLVDRVDTTEKLVALTLDDGPSER
CCCEEEEHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
ATEVLRVLAELDVRATFYLNGRDLDAHPELGRAIAAAGHELGNHTYSHRRMLFVSPATVR
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
EEVERTDTAIRATGYQGPVTFRPPYGKKLWSLPRYLADHDRTTIMWDVEPDSGTTADAAT
HHHHHHHHHEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
IAEQAVRETRPGSIILLHVMYGNAAESLAAIPGIVSDLRAQGYRFVTVSDLITH
HHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCC
>Mature Secondary Structure
MRRSWIIGTAAGLVLVLVVLIGGYRLVGSRTYQVAGRLVDRVDTTEKLVALTLDDGPSER
CCCEEEEHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
ATEVLRVLAELDVRATFYLNGRDLDAHPELGRAIAAAGHELGNHTYSHRRMLFVSPATVR
HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
EEVERTDTAIRATGYQGPVTFRPPYGKKLWSLPRYLADHDRTTIMWDVEPDSGTTADAAT
HHHHHHHHHEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
IAEQAVRETRPGSIILLHVMYGNAAESLAAIPGIVSDLRAQGYRFVTVSDLITH
HHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA