Click here to switch to the map view.

The map label for this gene is alc

Identifier: 54027211

GI number: 54027211

Start: 5535275

End: 5536264

Strand: Reverse

Name: alc

Synonym: nfa52370

Alternate gene names: 54027211

Gene position: 5536264-5535275 (Counterclockwise)

Preceding gene: 54027212

Following gene: 54027210

Centisome position: 91.95

GC content: 73.54

Gene sequence:

>990_bases
GTGAACGAGACAGCCGCCGACCGCGTCGCACCGCGCGGCTTCACCGAACTGCCGGATCTGGCGGTGCGCTCGCTCGGCGG
TGCGGTGATCTGGGCCGACGACGAGTTCTTCGCCGAGAAGGAGAACCTGATCGTGCCCGAGGCACCGGAGTTCCGGCCCG
CGACCTACGGGCACAGAGGCCAGGTGTACGACGGCTGGGAGACCCGCAGGCACCGTGGCCTGCCCGGCGACGACGCCGCC
GTCGTCCGGCTCGGCGTGCCCGGGGTGATCCACGGCGTCGTCGTCGACACCTCCTGGTTCACCGGCAACTATCCGCCCGC
GATCTCGCTGTCCGCCCTCGCGATCGACGGTTACCCGCCCGCCGCGGACATCGCCGCCCGCACCGACTGGGTACCCCTGC
TCGACCGGGTGCCGGTTCGCGGCGACGCCCGCAACCCGTTCCCGATCCCCAGCCGCGACCGCTGGACCCATGTGCGCCTC
ACCATGCACCCCGACGGCGGCATCGCCCGGCTGCGCGTCCACGGCGAGGGCAGGCCCGACCCGGCGCTGCTCGGCCTCGG
CCCGGTGGACCTGGCCGCCCTGGAGAACGGCGCCCTGGTGCTCGACTGCTCCGACCGCTTCTATGGGTCCCCGCACCAGC
TGCTCCATCCCGGCAACGCCCGCCGGATGGGCGACGGCTGGGAGACCGCGCGGCGCCGCGACGACGGCAACGACTGGGTG
CGCATCCGGCTCGCCGGTCCAGGCCTGATCCGGCTGGCCGAACTCGACACCTCCTACTTCCTCGGCAACAGTCCCGCCGC
CGCGCGGCTGACCGGGCGCACCACCGACGGCACCGAAGTGGAGCTGCTGCCGCGCACGCCGCTGCAACCCGACACCAGGC
ACCGCTTCCCGACCGCCGCGGTCGCTGCCTCCGTCGAGGAGGTCCGGCTCGACATCTATCCCGACGGCGGCCTGGCCCGG
GTCAGGCTGTTCGGGGAGCTGGGCGGATGA

Upstream 100 bases:

>100_bases
CCGAGGACGAAGTGCGAGCCGACGCACCGGAACTGGACGCGGCGGTGGTGCGCGCGCTGGCCTTGCGCAGACCGTTGCCC
CAGCTGGAACAGGAGACGCC

Downstream 100 bases:

>100_bases
CCCGCGATTTCGTCGGCTACGGACCGCACCCGCCGCACCCGCACTGGCCCGGTGCCGCGCGGATCGCCGTCCAGTTCGTG
CTCAACTACGAGGAAGGCGC

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNETAADRVAPRGFTELPDLAVRSLGGAVIWADDEFFAEKENLIVPEAPEFRPATYGHRGQVYDGWETRRHRGLPGDDAA
VVRLGVPGVIHGVVVDTSWFTGNYPPAISLSALAIDGYPPAADIAARTDWVPLLDRVPVRGDARNPFPIPSRDRWTHVRL
TMHPDGGIARLRVHGEGRPDPALLGLGPVDLAALENGALVLDCSDRFYGSPHQLLHPGNARRMGDGWETARRRDDGNDWV
RIRLAGPGLIRLAELDTSYFLGNSPAAARLTGRTTDGTEVELLPRTPLQPDTRHRFPTAAVAASVEEVRLDIYPDGGLAR
VRLFGELGG

Sequences:

>Translated_329_residues
MNETAADRVAPRGFTELPDLAVRSLGGAVIWADDEFFAEKENLIVPEAPEFRPATYGHRGQVYDGWETRRHRGLPGDDAA
VVRLGVPGVIHGVVVDTSWFTGNYPPAISLSALAIDGYPPAADIAARTDWVPLLDRVPVRGDARNPFPIPSRDRWTHVRL
TMHPDGGIARLRVHGEGRPDPALLGLGPVDLAALENGALVLDCSDRFYGSPHQLLHPGNARRMGDGWETARRRDDGNDWV
RIRLAGPGLIRLAELDTSYFLGNSPAAARLTGRTTDGTEVELLPRTPLQPDTRHRFPTAAVAASVEEVRLDIYPDGGLAR
VRLFGELGG
>Mature_329_residues
MNETAADRVAPRGFTELPDLAVRSLGGAVIWADDEFFAEKENLIVPEAPEFRPATYGHRGQVYDGWETRRHRGLPGDDAA
VVRLGVPGVIHGVVVDTSWFTGNYPPAISLSALAIDGYPPAADIAARTDWVPLLDRVPVRGDARNPFPIPSRDRWTHVRL
TMHPDGGIARLRVHGEGRPDPALLGLGPVDLAALENGALVLDCSDRFYGSPHQLLHPGNARRMGDGWETARRRDDGNDWV
RIRLAGPGLIRLAELDTSYFLGNSPAAARLTGRTTDGTEVELLPRTPLQPDTRHRFPTAAVAASVEEVRLDIYPDGGLAR
VRLFGELGG

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family

Homologues:

Organism=Homo sapiens, GI144953901, Length=365, Percent_Identity=38.0821917808219, Blast_Score=212, Evalue=4e-55,
Organism=Saccharomyces cerevisiae, GI6322220, Length=322, Percent_Identity=36.6459627329193, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALLC_NOCFA (Q5YP02)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121453.1
- ProteinModelPortal:   Q5YP02
- SMR:   Q5YP02
- GeneID:   3110724
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa52370
- NMPDR:   fig|247156.1.peg.5034
- HOGENOM:   HBG480577
- OMA:   DTSYFLG
- ProtClustDB:   PRK13257
- BioCyc:   NFAR247156:NFA52370-MONOMER
- BRENDA:   3.5.3.4
- HAMAP:   MF_00813
- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979
- PANTHER:   PTHR12045
- PIRSF:   PIRSF016516
- TIGRFAMs:   TIGR02961

Pfam domain/function: PF03561 Allantoicase; SSF49785 Gal_bind_like

EC number: =3.5.3.4

Molecular weight: Translated: 35823; Mature: 35823

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETAADRVAPRGFTELPDLAVRSLGGAVIWADDEFFAEKENLIVPEAPEFRPATYGHRG
CCCCCCHHCCCCCCCCCHHHHHHHCCCEEEEECCHHHHCCCCEECCCCCCCCCCCCCCCC
QVYDGWETRRHRGLPGDDAAVVRLGVPGVIHGVVVDTSWFTGNYPPAISLSALAIDGYPP
CEECCHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCC
AADIAARTDWVPLLDRVPVRGDARNPFPIPSRDRWTHVRLTMHPDGGIARLRVHGEGRPD
HHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC
PALLGLGPVDLAALENGALVLDCSDRFYGSPHQLLHPGNARRMGDGWETARRRDDGNDWV
CEEEECCCHHEEEECCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCCCCCCEE
RIRLAGPGLIRLAELDTSYFLGNSPAAARLTGRTTDGTEVELLPRTPLQPDTRHRFPTAA
EEEECCCCEEEEEECCCEEEECCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHH
VAASVEEVRLDIYPDGGLARVRLFGELGG
HHHCCEEEEEEEECCCCEEEEEEEEECCC
>Mature Secondary Structure
MNETAADRVAPRGFTELPDLAVRSLGGAVIWADDEFFAEKENLIVPEAPEFRPATYGHRG
CCCCCCHHCCCCCCCCCHHHHHHHCCCEEEEECCHHHHCCCCEECCCCCCCCCCCCCCCC
QVYDGWETRRHRGLPGDDAAVVRLGVPGVIHGVVVDTSWFTGNYPPAISLSALAIDGYPP
CEECCHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCC
AADIAARTDWVPLLDRVPVRGDARNPFPIPSRDRWTHVRLTMHPDGGIARLRVHGEGRPD
HHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC
PALLGLGPVDLAALENGALVLDCSDRFYGSPHQLLHPGNARRMGDGWETARRRDDGNDWV
CEEEECCCHHEEEECCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHCCCCCCCEE
RIRLAGPGLIRLAELDTSYFLGNSPAAARLTGRTTDGTEVELLPRTPLQPDTRHRFPTAA
EEEECCCCEEEEEECCCEEEECCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHH
VAASVEEVRLDIYPDGGLARVRLFGELGG
HHHCCEEEEEEEECCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA