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The map label for this gene is 54027170

Identifier: 54027170

GI number: 54027170

Start: 5493486

End: 5494715

Strand: Reverse

Name: 54027170

Synonym: nfa51960

Alternate gene names: NA

Gene position: 5494715-5493486 (Counterclockwise)

Preceding gene: 54027171

Following gene: 54027167

Centisome position: 91.26

GC content: 72.03

Gene sequence:

>1230_bases
GTGAGCTACCGCCCGTTGACCCGACCGGCCGCCGTCGTGGCGGCACTGCTCGCCGTGCTCGCGCTGCTCGCGGGCTGCAC
GATCGACCGCTCCGGCGACGACAACGGCGGCGGCCGCGGTCCCGTCGCCGAGGTCACCATGGACCCGGGTGACGGCGCGA
CCGAGGTGAATCCGGTGGCCCCGGTCTCGGTGCGGGTCGAGGACGGCACCATCGCCCAGGTCGCGCTGACCAACGCCGCG
GGCAAGCAGGTGGCGGGCGAGCTCGCCGCCGACCACCGCTCGTTCCGGATCACCGAACCGCTCGGCTACGGCGCCACCTA
CACCTGGTCGGGCACCGCGGTGGGCACCGACGGCGCCCCGGTGCCGATCGAGGGCAGCTTCACCACCCTCACCCCGGCGA
ACACCCAACCCGCGACGGTCAACATCGGCGACGGCCAGGAGGTCGGCATCGCGGCGCCGATCATCCTGCAATTCCAGGGC
GCGGTGCAGGACAAGGCGGCCGTCGAGAAGGCGCTGACGGTCACCACGAACCCGCCGACCGAGGGCGCATGGGCCTGGTT
CCCCGACGACAACGGCGGTTCCCGCGCGCACTGGCGGCCGAAGCAGTACTGGACGCCCGGCACCACCGTGCACGTCGCGG
CGCGGCTCTACGGGCTGGACCTGGGCGGGGGCAACTACGGCGCCGCCGACCTGACCACCGACTTCACCATCGGCCGCAGC
CAGATCGTGCGGGCGCACGCGCCGAGCCACCGGATGCAGGTGGTCCGCGACGGCGAGGTGATCTTCGACTTCCCGGCCAG
CTACGGCGAGGGCAACGAGGCGCGCAACGTCACCCGCTCGGGCATCCACGTGGTCACCGAGAAGTACGAGGACTTCCTCA
TGTCCAACCCGCCCTACTACGAGAACGTGCGGGAGCGCTGGGCGGTGCGGATCTCCAACAACGGGGAGTTCATCCACGCC
AACCCGGCCTCGCTGGCCGCGCAGGGCTCGGCCAACGTCACCAACGGCTGCATCAACCTCTCGCCCGAGGACGCGCAGGC
CTACTTCCCGACCGCGTTGTACGGCGACCCGGTGGAGGTGACCGGTACGTCCATCGCGCTGTCCGCCGCCGACGGCGACC
TCTACGACTGGACCATCGACTGGGACACCTGGCAGACCATGTCGGCGCTCGACGGCTCGGCGGCCCCGGTGGTCTCGGCG
ACACCGGTCACCCCGGGCCCGCCGCGCTGA

Upstream 100 bases:

>100_bases
CACCGTCGGCGTGCGGCTGTAGACGGCGCGCCACCCGAACCCGGCGGGGCGCGCCGCGCGTGCGGCCGCGCGGCCCGCCC
CGCGCGTAGATTCGACAGAC

Downstream 100 bases:

>100_bases
CCGCGCGGCTCAGGCGTCGGGTCGCGCGGTCGAGTCCAGCACCCACTGCCGGTATCCCGGGTGGGCCTCGACAACCGGCA
CGGCGAGCACCTGCGGCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MSYRPLTRPAAVVAALLAVLALLAGCTIDRSGDDNGGGRGPVAEVTMDPGDGATEVNPVAPVSVRVEDGTIAQVALTNAA
GKQVAGELAADHRSFRITEPLGYGATYTWSGTAVGTDGAPVPIEGSFTTLTPANTQPATVNIGDGQEVGIAAPIILQFQG
AVQDKAAVEKALTVTTNPPTEGAWAWFPDDNGGSRAHWRPKQYWTPGTTVHVAARLYGLDLGGGNYGAADLTTDFTIGRS
QIVRAHAPSHRMQVVRDGEVIFDFPASYGEGNEARNVTRSGIHVVTEKYEDFLMSNPPYYENVRERWAVRISNNGEFIHA
NPASLAAQGSANVTNGCINLSPEDAQAYFPTALYGDPVEVTGTSIALSAADGDLYDWTIDWDTWQTMSALDGSAAPVVSA
TPVTPGPPR

Sequences:

>Translated_409_residues
MSYRPLTRPAAVVAALLAVLALLAGCTIDRSGDDNGGGRGPVAEVTMDPGDGATEVNPVAPVSVRVEDGTIAQVALTNAA
GKQVAGELAADHRSFRITEPLGYGATYTWSGTAVGTDGAPVPIEGSFTTLTPANTQPATVNIGDGQEVGIAAPIILQFQG
AVQDKAAVEKALTVTTNPPTEGAWAWFPDDNGGSRAHWRPKQYWTPGTTVHVAARLYGLDLGGGNYGAADLTTDFTIGRS
QIVRAHAPSHRMQVVRDGEVIFDFPASYGEGNEARNVTRSGIHVVTEKYEDFLMSNPPYYENVRERWAVRISNNGEFIHA
NPASLAAQGSANVTNGCINLSPEDAQAYFPTALYGDPVEVTGTSIALSAADGDLYDWTIDWDTWQTMSALDGSAAPVVSA
TPVTPGPPR
>Mature_408_residues
SYRPLTRPAAVVAALLAVLALLAGCTIDRSGDDNGGGRGPVAEVTMDPGDGATEVNPVAPVSVRVEDGTIAQVALTNAAG
KQVAGELAADHRSFRITEPLGYGATYTWSGTAVGTDGAPVPIEGSFTTLTPANTQPATVNIGDGQEVGIAAPIILQFQGA
VQDKAAVEKALTVTTNPPTEGAWAWFPDDNGGSRAHWRPKQYWTPGTTVHVAARLYGLDLGGGNYGAADLTTDFTIGRSQ
IVRAHAPSHRMQVVRDGEVIFDFPASYGEGNEARNVTRSGIHVVTEKYEDFLMSNPPYYENVRERWAVRISNNGEFIHAN
PASLAAQGSANVTNGCINLSPEDAQAYFPTALYGDPVEVTGTSIALSAADGDLYDWTIDWDTWQTMSALDGSAAPVVSAT
PVTPGPPR

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 42980; Mature: 42849

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRPLTRPAAVVAALLAVLALLAGCTIDRSGDDNGGGRGPVAEVTMDPGDGATEVNPVA
CCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PVSVRVEDGTIAQVALTNAAGKQVAGELAADHRSFRITEPLGYGATYTWSGTAVGTDGAP
EEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECCEEECCCCCC
VPIEGSFTTLTPANTQPATVNIGDGQEVGIAAPIILQFQGAVQDKAAVEKALTVTTNPPT
CEECCCEEEECCCCCCCCEEECCCCCCCCEECEEEEEECCCCHHHHHHHHEEEEECCCCC
EGAWAWFPDDNGGSRAHWRPKQYWTPGTTVHVAARLYGLDLGGGNYGAADLTTDFTIGRS
CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCHH
QIVRAHAPSHRMQVVRDGEVIFDFPASYGEGNEARNVTRSGIHVVTEKYEDFLMSNPPYY
HEEEECCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHCCEEEEHHHHHHHHCCCCCHH
ENVRERWAVRISNNGEFIHANPASLAAQGSANVTNGCINLSPEDAQAYFPTALYGDPVEV
HHHHCEEEEEECCCCCEEEECHHHHEECCCCCCCCCEEECCCCCCCEECCHHHCCCCEEE
TGTSIALSAADGDLYDWTIDWDTWQTMSALDGSAAPVVSATPVTPGPPR
CCCEEEEEECCCCEEEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
SYRPLTRPAAVVAALLAVLALLAGCTIDRSGDDNGGGRGPVAEVTMDPGDGATEVNPVA
CCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PVSVRVEDGTIAQVALTNAAGKQVAGELAADHRSFRITEPLGYGATYTWSGTAVGTDGAP
EEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCEEEECCEEECCCCCC
VPIEGSFTTLTPANTQPATVNIGDGQEVGIAAPIILQFQGAVQDKAAVEKALTVTTNPPT
CEECCCEEEECCCCCCCCEEECCCCCCCCEECEEEEEECCCCHHHHHHHHEEEEECCCCC
EGAWAWFPDDNGGSRAHWRPKQYWTPGTTVHVAARLYGLDLGGGNYGAADLTTDFTIGRS
CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEECCHH
QIVRAHAPSHRMQVVRDGEVIFDFPASYGEGNEARNVTRSGIHVVTEKYEDFLMSNPPYY
HEEEECCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHCCEEEEHHHHHHHHCCCCCHH
ENVRERWAVRISNNGEFIHANPASLAAQGSANVTNGCINLSPEDAQAYFPTALYGDPVEV
HHHHCEEEEEECCCCCEEEECHHHHEECCCCCCCCCEEECCCCCCCEECCHHHCCCCEEE
TGTSIALSAADGDLYDWTIDWDTWQTMSALDGSAAPVVSATPVTPGPPR
CCCEEEEEECCCCEEEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]