Click here to switch to the map view.

The map label for this gene is 54027053

Identifier: 54027053

GI number: 54027053

Start: 5378543

End: 5379115

Strand: Reverse

Name: 54027053

Synonym: nfa50790

Alternate gene names: NA

Gene position: 5379115-5378543 (Counterclockwise)

Preceding gene: 54027054

Following gene: 54027052

Centisome position: 89.34

GC content: 70.68

Gene sequence:

>573_bases
GTGAGGGGTGGGGCGTTGATGGGCAGGGTTCCCGGTCGCCGGGCGGCGGCGCTGAGCGGCGCCGTGCTGGCGCTGGTCGC
GATGGTGGCCGGGTGCGGGCGCACCGTCGAGGGCGCGGCCTTCCCGGCCGGCGGCAGCCAGGAGATCAACACCAACTTCG
ACAAGCTGCTCCGCGAATGCGACGTGGTCGAGCCGGCGAAGATCGGTGAAGCGGTCGGCGACGCCAGGTACGTCAACGGC
TCGTTCAACGGCGCGGTCTGCATGTGGGATGTGGAGGACGCGCCGGGCGGGCTGGCGATGGTCACGCTGAACTGGTACGA
GATCGGCTCGCTCAACAACGAGAAGATCACCGCCGACAAGCTCGGCTACAGCACCGAGACCATCACCGTGCAGGGCAGGC
GAGGCCTGCAGGTGCGTCGACCCGGGGATCCGGACTCCTGCGGGGTGACCGCCTCGGCGGCCGACACCGGGGTGGTGGGC
TGGTGGATCAACTACCGCGCCGGGTCCGCGCACCCCGACCCGTGCGGCGCGGCCAAGACGCTGCTGGAGCTGACGCTGAA
TCTGGCCAGGTGA

Upstream 100 bases:

>100_bases
ACTTCTTCGAGTGGTCGATGTCGTACGGGTTCTTCGGGCCGTTGGACAACCCGTGTGACAAGACCAGGAAGTTGGCCGAA
CTCACCGTGGCGCGGTTGAA

Downstream 100 bases:

>100_bases
TTCCCCGCCCGCCGGACCCCCGCTTTGACCATCTGCGCAGGCCGCGGGTATCGTGGATCGCTGTGCCCGGAAGCATGCGG
GCAAGTTCGTGCGTAGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: Lipoprotein; LprC Protein

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRGGALMGRVPGRRAAALSGAVLALVAMVAGCGRTVEGAAFPAGGSQEINTNFDKLLRECDVVEPAKIGEAVGDARYVNG
SFNGAVCMWDVEDAPGGLAMVTLNWYEIGSLNNEKITADKLGYSTETITVQGRRGLQVRRPGDPDSCGVTASAADTGVVG
WWINYRAGSAHPDPCGAAKTLLELTLNLAR

Sequences:

>Translated_190_residues
MRGGALMGRVPGRRAAALSGAVLALVAMVAGCGRTVEGAAFPAGGSQEINTNFDKLLRECDVVEPAKIGEAVGDARYVNG
SFNGAVCMWDVEDAPGGLAMVTLNWYEIGSLNNEKITADKLGYSTETITVQGRRGLQVRRPGDPDSCGVTASAADTGVVG
WWINYRAGSAHPDPCGAAKTLLELTLNLAR
>Mature_190_residues
MRGGALMGRVPGRRAAALSGAVLALVAMVAGCGRTVEGAAFPAGGSQEINTNFDKLLRECDVVEPAKIGEAVGDARYVNG
SFNGAVCMWDVEDAPGGLAMVTLNWYEIGSLNNEKITADKLGYSTETITVQGRRGLQVRRPGDPDSCGVTASAADTGVVG
WWINYRAGSAHPDPCGAAKTLLELTLNLAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19783; Mature: 19783

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGGALMGRVPGRRAAALSGAVLALVAMVAGCGRTVEGAAFPAGGSQEINTNFDKLLREC
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
DVVEPAKIGEAVGDARYVNGSFNGAVCMWDVEDAPGGLAMVTLNWYEIGSLNNEKITADK
CCCCCHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEHHH
LGYSTETITVQGRRGLQVRRPGDPDSCGVTASAADTGVVGWWINYRAGSAHPDPCGAAKT
CCCCCEEEEEECCCCEEEECCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCHHHHH
LLELTLNLAR
HHHHHHHHCC
>Mature Secondary Structure
MRGGALMGRVPGRRAAALSGAVLALVAMVAGCGRTVEGAAFPAGGSQEINTNFDKLLREC
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
DVVEPAKIGEAVGDARYVNGSFNGAVCMWDVEDAPGGLAMVTLNWYEIGSLNNEKITADK
CCCCCHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEHHH
LGYSTETITVQGRRGLQVRRPGDPDSCGVTASAADTGVVGWWINYRAGSAHPDPCGAAKT
CCCCCEEEEEECCCCEEEECCCCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCCHHHHH
LLELTLNLAR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA