| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026910
Identifier: 54026910
GI number: 54026910
Start: 5155070
End: 5155984
Strand: Reverse
Name: 54026910
Synonym: nfa49360
Alternate gene names: NA
Gene position: 5155984-5155070 (Counterclockwise)
Preceding gene: 54026911
Following gene: 54026909
Centisome position: 85.63
GC content: 57.05
Gene sequence:
>915_bases TTGACGACGCCCAACCCTGAAAACCAGCCCAACGCCGAAGAGCAAGCGTTGCTCGACAAGATTGCCTTTATCAGGTCGCA GATCGAGAAAATTGGTGATCTGCCGAGTCAGGTCGATTCCTGGTGCGGGCGAATGGTGCAGATGATCCGCATGGACAGTA TTGCCAGCGCGGGGTCCAAGGCATTGTCCAATGAGCGGATCATCGACATGATATGGGAGGAACGGGACAGGGTGAACGGA GCGCTTCGGGATTCCTGGAGCGAGCTCAAGAAGGTTGACCCCGACCTGGAGGTTCCAGTCACGTTCATTCGCGTGGCCAA TGAGTGGCGGAACGTGAAGACTGCTGTTCTGCAAGCGGAATCCGACTACCAGAAGACCATTCTGAGTACGGAATGGCATG GGGACGCAGCAAGCCGATATGGCGGCATGCGTAACACGCAAGAGCTGGCGTTGAGCAGTCTGATCACGACGTTCGAGGAC ATAGCGGAGAGTCTGGACACCATCGCGAAGGCCGAACTAATGCTCTATGTAGAATTGGCTGACAAGGTTCAGGAGCTCGA ACAGAACGTAGTGGAGTCCGTTGGCGATCTGCGAGACGTGTTGGTGCTTCCGCTGGGTCCCTTGAGCGCCGTGGCCGAAT TGGCCAACGTGGCGGAGGCTGCGAGGACATTCATTGTGGGGACGATCGGTACAATGGCGGATAGTGCGGCAACCATGATG ATCGAGAGCAACAAAATCGAGCAGAATGAAGGCTATCAAAGCGGGCTTCCTGATAACAAGTGGCCACCCGGCGTAAAGGG TGCATATGGCAACGGGCTCGATGGAATAAAGAACGCGATCGGCGACGCGACGGCCGACGACGGAGACAAGTCCGACTGGG AGTTGGGTCCGGCGCCGGTGGTGGTCGCGCAATGA
Upstream 100 bases:
>100_bases GTTTTCAACGATATCGGTACAGCGCTCAACTATGCGCGTCGCCAGTACGACGATCAGGACATAGCCAACCAGGGGCGAAT ACGGCAGTTGGAGGGACAAG
Downstream 100 bases:
>100_bases GGATGATTCTCACGGCTGTAGGAGTGTCCGGAGTAATTGCTCTTGCGACCGGGTGCTCCGACATCCAGTCCACACCCTCA ACGCCAACCGTTTCGACGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTTPNPENQPNAEEQALLDKIAFIRSQIEKIGDLPSQVDSWCGRMVQMIRMDSIASAGSKALSNERIIDMIWEERDRVNG ALRDSWSELKKVDPDLEVPVTFIRVANEWRNVKTAVLQAESDYQKTILSTEWHGDAASRYGGMRNTQELALSSLITTFED IAESLDTIAKAELMLYVELADKVQELEQNVVESVGDLRDVLVLPLGPLSAVAELANVAEAARTFIVGTIGTMADSAATMM IESNKIEQNEGYQSGLPDNKWPPGVKGAYGNGLDGIKNAIGDATADDGDKSDWELGPAPVVVAQ
Sequences:
>Translated_304_residues MTTPNPENQPNAEEQALLDKIAFIRSQIEKIGDLPSQVDSWCGRMVQMIRMDSIASAGSKALSNERIIDMIWEERDRVNG ALRDSWSELKKVDPDLEVPVTFIRVANEWRNVKTAVLQAESDYQKTILSTEWHGDAASRYGGMRNTQELALSSLITTFED IAESLDTIAKAELMLYVELADKVQELEQNVVESVGDLRDVLVLPLGPLSAVAELANVAEAARTFIVGTIGTMADSAATMM IESNKIEQNEGYQSGLPDNKWPPGVKGAYGNGLDGIKNAIGDATADDGDKSDWELGPAPVVVAQ >Mature_303_residues TTPNPENQPNAEEQALLDKIAFIRSQIEKIGDLPSQVDSWCGRMVQMIRMDSIASAGSKALSNERIIDMIWEERDRVNGA LRDSWSELKKVDPDLEVPVTFIRVANEWRNVKTAVLQAESDYQKTILSTEWHGDAASRYGGMRNTQELALSSLITTFEDI AESLDTIAKAELMLYVELADKVQELEQNVVESVGDLRDVLVLPLGPLSAVAELANVAEAARTFIVGTIGTMADSAATMMI ESNKIEQNEGYQSGLPDNKWPPGVKGAYGNGLDGIKNAIGDATADDGDKSDWELGPAPVVVAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33166; Mature: 33034
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPNPENQPNAEEQALLDKIAFIRSQIEKIGDLPSQVDSWCGRMVQMIRMDSIASAGSK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALSNERIIDMIWEERDRVNGALRDSWSELKKVDPDLEVPVTFIRVANEWRNVKTAVLQAE HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SDYQKTILSTEWHGDAASRYGGMRNTQELALSSLITTFEDIAESLDTIAKAELMLYVELA HHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKVQELEQNVVESVGDLRDVLVLPLGPLSAVAELANVAEAARTFIVGTIGTMADSAATMM HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE IESNKIEQNEGYQSGLPDNKWPPGVKGAYGNGLDGIKNAIGDATADDGDKSDWELGPAPV EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCE VVAQ EECC >Mature Secondary Structure TTPNPENQPNAEEQALLDKIAFIRSQIEKIGDLPSQVDSWCGRMVQMIRMDSIASAGSK CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ALSNERIIDMIWEERDRVNGALRDSWSELKKVDPDLEVPVTFIRVANEWRNVKTAVLQAE HHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SDYQKTILSTEWHGDAASRYGGMRNTQELALSSLITTFEDIAESLDTIAKAELMLYVELA HHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DKVQELEQNVVESVGDLRDVLVLPLGPLSAVAELANVAEAARTFIVGTIGTMADSAATMM HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE IESNKIEQNEGYQSGLPDNKWPPGVKGAYGNGLDGIKNAIGDATADDGDKSDWELGPAPV EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCE VVAQ EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA