| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is bcsA [H]
Identifier: 54026903
GI number: 54026903
Start: 5149397
End: 5150599
Strand: Reverse
Name: bcsA [H]
Synonym: nfa49290
Alternate gene names: 54026903
Gene position: 5150599-5149397 (Counterclockwise)
Preceding gene: 54026904
Following gene: 54026902
Centisome position: 85.54
GC content: 70.24
Gene sequence:
>1203_bases ATGTCCATCACCGTCGACGAGGGCGGCGCCCGTCCCGCCACCGAGCCCCGTCAGCGCATCCATCCCGACCTCGGCCACGC ACACACCCCGATGCCGCCGGCGCCGCCGGTCACCATCGGCGTGGTCGAGGGCATCGCGACCGGCTCACCCGCGCAGATCG TGGACCAGGCCGAGGCGGCCGAACGGGTCGCCGCCCTGTTCACCGATCCGGCCCAGCGCGCCCGCATCGCCCGGGTCTAC GAGAAGACCAGGATCGAGACCCGGCGGATGGCGGTCGACCCGACCGCGCCCGAATTCCGGTCCTTCAGCAGGCAGCCCGG CACGCTGCGGGAGCGGATGAACCTCTTCTACCGGCACGCCGCACCGCTGGCGGTGGACGTCGCGGGCCGCGCGCTCGCCG ACTCCGGCGCGGCGGCCGCCGACATCGGGCTGCTGGTGTTCGTCACCAGCACCGGTTTCATCGCCCCCGGCGTGGATGTC GCGGTGCTGCGGGAGCTCGGACTCGTGCCGACCGTGGGGCGGGTGGTCGTGAACTTCATGGGGTGCGCGGCCGCCATGAA CGGCATTCGCACCGGCGTCGACTACGTGCGCGCGCATCCGGACAAGAAGGCGCTGGTCGTGTGCCTCGAGTTGAGTTCGG TGAACGCGGTCTTCGCCGATGATGTCAACGACGTGATCATCCACAGCCTCTTCGGCGACGGATGCGGCGCGGTGGTGCTC GGCGCGAGCCAGGCCAGGCAGCCGCTGGCGCCGGGCCGGGTCGTGGTGCGCGACAGCTTCAGCCACCTGTTCGACGCCGC CGAGGACGGCATCGTGCTCGGGGTCGACCACAACGGCATCACCTGCGAATTGTCGGAGAACCTGCCGCGGTACATCTACC GCGGGGTCGACCCGGTGGTGCGGGAAGTGCTGGCGCGCAACGGACTGCGCAAGAGCGACATCGATCTGTGGGCGATCCAC CCGGGCGGACCGAAGATCATCGAGGAATCGGTGCGCTCGCTGGGGCTTTCGCCCGAGCAGGCGGCGCCGAGCTGGGACGT GCTGGCCCGGCACGGCAACATGCTCTCGGTCTCGCTGATCTTCGTGCTGGAGCAGATGATCGCGCAGTCCGCGACCGCCG AACCCATCTCGACGGGTGTGGCGTTCTCCTTCGCGCCCGGGGTCACGCTCGAGGGCCTGATCTTCGACATCATCCGTCGC TGA
Upstream 100 bases:
>100_bases CCGGGATCGGCACCGTCTGAACCGATTCCATCACCGCTCACCGACGTACCGTCCGGAGGCAGCGCCGCCGACCGCCATTC CTCGAAGGGAAACAACCACC
Downstream 100 bases:
>100_bases GGCCGTCATGCAACTCCTCCGATTTCTCGTATCGATCTCCTGGGCGCGCATCGTCGCGGTCGTCGCCGCGGGCCTGGTGT GCGGTGCGGCGAACACCTAT
Product: putative type III polyketide synthase
Products: NA
Alternate protein names: Naringenin-chalcone synthase [H]
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MSITVDEGGARPATEPRQRIHPDLGHAHTPMPPAPPVTIGVVEGIATGSPAQIVDQAEAAERVAALFTDPAQRARIARVY EKTRIETRRMAVDPTAPEFRSFSRQPGTLRERMNLFYRHAAPLAVDVAGRALADSGAAAADIGLLVFVTSTGFIAPGVDV AVLRELGLVPTVGRVVVNFMGCAAAMNGIRTGVDYVRAHPDKKALVVCLELSSVNAVFADDVNDVIIHSLFGDGCGAVVL GASQARQPLAPGRVVVRDSFSHLFDAAEDGIVLGVDHNGITCELSENLPRYIYRGVDPVVREVLARNGLRKSDIDLWAIH PGGPKIIEESVRSLGLSPEQAAPSWDVLARHGNMLSVSLIFVLEQMIAQSATAEPISTGVAFSFAPGVTLEGLIFDIIRR
Sequences:
>Translated_400_residues MSITVDEGGARPATEPRQRIHPDLGHAHTPMPPAPPVTIGVVEGIATGSPAQIVDQAEAAERVAALFTDPAQRARIARVY EKTRIETRRMAVDPTAPEFRSFSRQPGTLRERMNLFYRHAAPLAVDVAGRALADSGAAAADIGLLVFVTSTGFIAPGVDV AVLRELGLVPTVGRVVVNFMGCAAAMNGIRTGVDYVRAHPDKKALVVCLELSSVNAVFADDVNDVIIHSLFGDGCGAVVL GASQARQPLAPGRVVVRDSFSHLFDAAEDGIVLGVDHNGITCELSENLPRYIYRGVDPVVREVLARNGLRKSDIDLWAIH PGGPKIIEESVRSLGLSPEQAAPSWDVLARHGNMLSVSLIFVLEQMIAQSATAEPISTGVAFSFAPGVTLEGLIFDIIRR >Mature_399_residues SITVDEGGARPATEPRQRIHPDLGHAHTPMPPAPPVTIGVVEGIATGSPAQIVDQAEAAERVAALFTDPAQRARIARVYE KTRIETRRMAVDPTAPEFRSFSRQPGTLRERMNLFYRHAAPLAVDVAGRALADSGAAAADIGLLVFVTSTGFIAPGVDVA VLRELGLVPTVGRVVVNFMGCAAAMNGIRTGVDYVRAHPDKKALVVCLELSSVNAVFADDVNDVIIHSLFGDGCGAVVLG ASQARQPLAPGRVVVRDSFSHLFDAAEDGIVLGVDHNGITCELSENLPRYIYRGVDPVVREVLARNGLRKSDIDLWAIHP GGPKIIEESVRSLGLSPEQAAPSWDVLARHGNMLSVSLIFVLEQMIAQSATAEPISTGVAFSFAPGVTLEGLIFDIIRR
Specific function: Catalyzes The Condensation Reaction Of Fatty Acid Synthesis By The Addition To An Acyl Acceptor Of Two Carbons From Malonyl-Acp. Catalyzes The First Condensation Reaction Which Initiates Fatty Acid Synthesis And May Therefore Play A Role In Governing The
COG id: COG3424
COG function: function code Q; Predicted naringenin-chalcone synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chalcone/stilbene synthases family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012328 - InterPro: IPR018088 - InterPro: IPR001099 - InterPro: IPR011141 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF02797 Chal_sti_synt_C; PF00195 Chal_sti_synt_N [H]
EC number: =2.3.1.74 [H]
Molecular weight: Translated: 42589; Mature: 42458
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITVDEGGARPATEPRQRIHPDLGHAHTPMPPAPPVTIGVVEGIATGSPAQIVDQAEAA CEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHH ERVAALFTDPAQRARIARVYEKTRIETRRMAVDPTAPEFRSFSRQPGTLRERMNLFYRHA HHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCCCCHHHHHHHHHHHHC APLAVDVAGRALADSGAAAADIGLLVFVTSTGFIAPGVDVAVLRELGLVPTVGRVVVNFM CCEEEECCCHHHHCCCCCHHHHEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH GCAAAMNGIRTGVDYVRAHPDKKALVVCLELSSVNAVFADDVNDVIIHSLFGDGCGAVVL HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEHHCCHHHHHHHHHHCCCCCEEEE GASQARQPLAPGRVVVRDSFSHLFDAAEDGIVLGVDHNGITCELSENLPRYIYRGVDPVV CCHHHCCCCCCCEEEEECCHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHCCCHHH REVLARNGLRKSDIDLWAIHPGGPKIIEESVRSLGLSPEQAAPSWDVLARHGNMLSVSLI HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHCCCCHHHHHHCCCCHHHHHH FVLEQMIAQSATAEPISTGVAFSFAPGVTLEGLIFDIIRR HHHHHHHHHCCCCCHHHCCCEEEECCCCCHHHHHHHHHCC >Mature Secondary Structure SITVDEGGARPATEPRQRIHPDLGHAHTPMPPAPPVTIGVVEGIATGSPAQIVDQAEAA EEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHH ERVAALFTDPAQRARIARVYEKTRIETRRMAVDPTAPEFRSFSRQPGTLRERMNLFYRHA HHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCCCCHHHHHHHHHHHHC APLAVDVAGRALADSGAAAADIGLLVFVTSTGFIAPGVDVAVLRELGLVPTVGRVVVNFM CCEEEECCCHHHHCCCCCHHHHEEEEEEECCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH GCAAAMNGIRTGVDYVRAHPDKKALVVCLELSSVNAVFADDVNDVIIHSLFGDGCGAVVL HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEHHCCHHHHHHHHHHCCCCCEEEE GASQARQPLAPGRVVVRDSFSHLFDAAEDGIVLGVDHNGITCELSENLPRYIYRGVDPVV CCHHHCCCCCCCEEEEECCHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHCCCHHH REVLARNGLRKSDIDLWAIHPGGPKIIEESVRSLGLSPEQAAPSWDVLARHGNMLSVSLI HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHCCCCHHHHHHCCCCHHHHHH FVLEQMIAQSATAEPISTGVAFSFAPGVTLEGLIFDIIRR HHHHHHHHHCCCCCHHHCCCEEEECCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]