Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54026900

Identifier: 54026900

GI number: 54026900

Start: 5146003

End: 5146854

Strand: Reverse

Name: 54026900

Synonym: nfa49260

Alternate gene names: NA

Gene position: 5146854-5146003 (Counterclockwise)

Preceding gene: 54026902

Following gene: 54026897

Centisome position: 85.48

GC content: 71.48

Gene sequence:

>852_bases
ATGCCGACCGTCGAACTCGCCGCGGGCAGGCTGCACTATGTGGAGCGGGGGGAGGGGCCGCCCGTCGTCCTGCTGCACGG
CCTGCTCATGAACCACACCGTGTGGGACGAGGTGCTCGACCTGCTGCCCACCGGATTCCGCTACGTCCTGCCCGACCTGC
CGCTCGGCGCGCATCCCGAACCGCTGCGCCCCGGCGTCGACCTGAGCCTGCACGGACTCAACCGCCTGGTCGCGGGTTTC
CTGGCCGCCCTCGACCTGCGCGACGTCACCCTGGTGCACAGCGATTGGGGCGGTGCGCTGTTCCTCACCGCGTACGGCCT
CGACGAACGGGTCGGTGGCCTCATCGCACTGCCCTGCGAAGCCTTCGGCAACTTTCCGCCCGGACTGCCGGGCCGGATGG
CCGTGATCGCCACGCGCGTGCCCGGCGGCGTGCCGTTGGCGTTGCGGCAGTTGCGGATTCCGTGGTTGCGGCGCTCACCG
CTGTTGTTCGGGTGGATGGCGCGCGGCGGGGTGTCCGACGAACTGGTGCGCGGGTGGACCGAGCCGGGGCTGCGCGATCC
GGGCATCCGGCGCGACCTGCTCGCCTACGCGCGGAGCGGGTTCCACCAGCGTGAGCTGATCGCGAACACCGAAGCGCTCC
GGCGCTTTTCCGGGCCCGCGTTGATCCTGTGGTCGTCCGCGGGGAAAGTGATGCCGCGCGAGCACGGCCGCGGGCTGGCC
GAATTGATCCCCGACGCGCGGCTGGTCGAGATCGATGACGCGTATGTCCTGTCGATGCTCGACCAGCCGCGTGCGGTGGC
CGCGGCGATGGGCTCGTTCCTGCTCGCCCACCGGGCCGTCTCCGACCGCTGA

Upstream 100 bases:

>100_bases
TCCCGCGTGCTGCTCGACATCTTCCCGGTTGACATCTGCTCGGTCACGGTTCCAGACTAGAGCAAATACTCTAGAGCGAT
CGCTCGAATGGAGGCTAGGG

Downstream 100 bases:

>100_bases
CCGCCCGGGCGGCGGCCTACTGCGCGGCGGGAGCGGACTCCACCGGGACCAGCGAGCCCTCGATCGCGCCGACGCCCGCG
CCGATCAGCGCACCCACCGC

Product: putative hydrolase

Products: NA

Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase; Hydrolase Or Acyltransferase-Like Protein; Hydrolase Alpha/Beta Hydrolase Fold; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold Family Hydrolase; Hydrolase Alpha/Beta Fold Family Protein; Hydrolase/Oxidase

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGF
LAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSP
LLFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA
ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR

Sequences:

>Translated_283_residues
MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGF
LAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSP
LLFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA
ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR
>Mature_282_residues
PTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGFL
AALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPL
LFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLAE
LIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30871; Mature: 30740

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPE
CCCHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
PLRPGVDLSLHGLNRLVAGFLAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCE
CCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHCCEEEECHH
AFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPLLFGWMARGGVSDELVRGWT
HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHCCCCCEEEHHHCCCCCHHHHHCCC
EPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHH
ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR
HHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPE
CCHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
PLRPGVDLSLHGLNRLVAGFLAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCE
CCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHCCEEEECHH
AFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPLLFGWMARGGVSDELVRGWT
HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHCCCCCEEEHHHCCCCCHHHHHCCC
EPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHH
ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR
HHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA