| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026900
Identifier: 54026900
GI number: 54026900
Start: 5146003
End: 5146854
Strand: Reverse
Name: 54026900
Synonym: nfa49260
Alternate gene names: NA
Gene position: 5146854-5146003 (Counterclockwise)
Preceding gene: 54026902
Following gene: 54026897
Centisome position: 85.48
GC content: 71.48
Gene sequence:
>852_bases ATGCCGACCGTCGAACTCGCCGCGGGCAGGCTGCACTATGTGGAGCGGGGGGAGGGGCCGCCCGTCGTCCTGCTGCACGG CCTGCTCATGAACCACACCGTGTGGGACGAGGTGCTCGACCTGCTGCCCACCGGATTCCGCTACGTCCTGCCCGACCTGC CGCTCGGCGCGCATCCCGAACCGCTGCGCCCCGGCGTCGACCTGAGCCTGCACGGACTCAACCGCCTGGTCGCGGGTTTC CTGGCCGCCCTCGACCTGCGCGACGTCACCCTGGTGCACAGCGATTGGGGCGGTGCGCTGTTCCTCACCGCGTACGGCCT CGACGAACGGGTCGGTGGCCTCATCGCACTGCCCTGCGAAGCCTTCGGCAACTTTCCGCCCGGACTGCCGGGCCGGATGG CCGTGATCGCCACGCGCGTGCCCGGCGGCGTGCCGTTGGCGTTGCGGCAGTTGCGGATTCCGTGGTTGCGGCGCTCACCG CTGTTGTTCGGGTGGATGGCGCGCGGCGGGGTGTCCGACGAACTGGTGCGCGGGTGGACCGAGCCGGGGCTGCGCGATCC GGGCATCCGGCGCGACCTGCTCGCCTACGCGCGGAGCGGGTTCCACCAGCGTGAGCTGATCGCGAACACCGAAGCGCTCC GGCGCTTTTCCGGGCCCGCGTTGATCCTGTGGTCGTCCGCGGGGAAAGTGATGCCGCGCGAGCACGGCCGCGGGCTGGCC GAATTGATCCCCGACGCGCGGCTGGTCGAGATCGATGACGCGTATGTCCTGTCGATGCTCGACCAGCCGCGTGCGGTGGC CGCGGCGATGGGCTCGTTCCTGCTCGCCCACCGGGCCGTCTCCGACCGCTGA
Upstream 100 bases:
>100_bases TCCCGCGTGCTGCTCGACATCTTCCCGGTTGACATCTGCTCGGTCACGGTTCCAGACTAGAGCAAATACTCTAGAGCGAT CGCTCGAATGGAGGCTAGGG
Downstream 100 bases:
>100_bases CCGCCCGGGCGGCGGCCTACTGCGCGGCGGGAGCGGACTCCACCGGGACCAGCGAGCCCTCGATCGCGCCGACGCCCGCG CCGATCAGCGCACCCACCGC
Product: putative hydrolase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase; Hydrolase Or Acyltransferase-Like Protein; Hydrolase Alpha/Beta Hydrolase Fold; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold Family Hydrolase; Hydrolase Alpha/Beta Fold Family Protein; Hydrolase/Oxidase
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGF LAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSP LLFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR
Sequences:
>Translated_283_residues MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGF LAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSP LLFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR >Mature_282_residues PTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPEPLRPGVDLSLHGLNRLVAGFL AALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCEAFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPL LFGWMARGGVSDELVRGWTEPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLAE LIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30871; Mature: 30740
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPE CCCHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC PLRPGVDLSLHGLNRLVAGFLAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCE CCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHCCEEEECHH AFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPLLFGWMARGGVSDELVRGWT HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHCCCCCEEEHHHCCCCCHHHHHCCC EPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHH ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR HHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PTVELAAGRLHYVERGEGPPVVLLHGLLMNHTVWDEVLDLLPTGFRYVLPDLPLGAHPE CCHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC PLRPGVDLSLHGLNRLVAGFLAALDLRDVTLVHSDWGGALFLTAYGLDERVGGLIALPCE CCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCHHHHCCEEEECHH AFGNFPPGLPGRMAVIATRVPGGVPLALRQLRIPWLRRSPLLFGWMARGGVSDELVRGWT HHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCHHCCCCCEEEHHHCCCCCHHHHHCCC EPGLRDPGIRRDLLAYARSGFHQRELIANTEALRRFSGPALILWSSAGKVMPREHGRGLA CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCHH ELIPDARLVEIDDAYVLSMLDQPRAVAAAMGSFLLAHRAVSDR HHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA