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The map label for this gene is soxR [H]

Identifier: 54026882

GI number: 54026882

Start: 5123060

End: 5123548

Strand: Reverse

Name: soxR [H]

Synonym: nfa49080

Alternate gene names: 54026882

Gene position: 5123548-5123060 (Counterclockwise)

Preceding gene: 54026885

Following gene: 54026881

Centisome position: 85.09

GC content: 68.92

Gene sequence:

>489_bases
GTGATGTCGACAGCCGACTGGCGTGCCAAGGAACTGACCCCGGGCCAACTGTCCGAGCGCAGCGGAGTCGCCGTGTCCGC
CCTGCACTTCTACGAGCGCGAGGGGCTGATCTCCAGCCGCCGGACCAGTGGCAACCAACGCCGCTACGCCCGCGAGACGT
TGCGCCGGGTCGCCTTCATCCGCATCTCGCAACGCGTGGGAATTCCGCTCAGCGAGATCAAGGCCGCGCTCGACCGGCTG
CCCGAGGGACGCACGCCCACCCGCCGCGACTGGGAGACCGTGTCCACCGCGTGGCGCGCCGACCTCGACGACCGGATCGA
GCAGCTGATCCGCCTGCGGGACAACCTCACCGGCTGCATCGGCTGCGGCTGTCTGTCGCTGGGCACCTGCAAGCTGGTCA
ACGAACACGACCGGCTCGGCGAACAAGGACCGGGCGCTCGCGTCCTCGACACCCACCTCAACTGCACCACGAAACAGGCG
TCCTGCTGA

Upstream 100 bases:

>100_bases
GCGGATCACCCGCTGCCGGAAAGACACACACATGCGCATGTGTACGAAACGCTCCGAGGTGACCCTAACCTGAAGTATGG
TTCAGCCGGAACGAAGGAGT

Downstream 100 bases:

>100_bases
TCCGGGCGCGTGTCAGGGTGCGGCGGGCCCGGGCGGCGACCATGATCGAGTCATGACCACTCTGGAGAACAAGGCCAAGA
CCCTGCTCGCCCTGCACCGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MMSTADWRAKELTPGQLSERSGVAVSALHFYEREGLISSRRTSGNQRRYARETLRRVAFIRISQRVGIPLSEIKAALDRL
PEGRTPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGCIGCGCLSLGTCKLVNEHDRLGEQGPGARVLDTHLNCTTKQA
SC

Sequences:

>Translated_162_residues
MMSTADWRAKELTPGQLSERSGVAVSALHFYEREGLISSRRTSGNQRRYARETLRRVAFIRISQRVGIPLSEIKAALDRL
PEGRTPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGCIGCGCLSLGTCKLVNEHDRLGEQGPGARVLDTHLNCTTKQA
SC
>Mature_162_residues
MMSTADWRAKELTPGQLSERSGVAVSALHFYEREGLISSRRTSGNQRRYARETLRRVAFIRISQRVGIPLSEIKAALDRL
PEGRTPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGCIGCGCLSLGTCKLVNEHDRLGEQGPGARVLDTHLNCTTKQA
SC

Specific function: Activates the transcription of the soxS gene which itself controls the superoxide response regulon. SoxR contains a 2Fe-2S iron-sulfur cluster that may act as a redox sensor system that recognizes superoxide. The variable redox state of the Fe-S cluster i

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790498, Length=143, Percent_Identity=59.4405594405594, Blast_Score=176, Evalue=8e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR010211
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 18196; Mature: 18196

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTADWRAKELTPGQLSERSGVAVSALHFYEREGLISSRRTSGNQRRYARETLRRVAFI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHH
RISQRVGIPLSEIKAALDRLPEGRTPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGCI
HHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
GCGCLSLGTCKLVNEHDRLGEQGPGARVLDTHLNCTTKQASC
HHHHHHCCHHHCCCCHHHCCCCCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MMSTADWRAKELTPGQLSERSGVAVSALHFYEREGLISSRRTSGNQRRYARETLRRVAFI
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHH
RISQRVGIPLSEIKAALDRLPEGRTPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGCI
HHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
GCGCLSLGTCKLVNEHDRLGEQGPGARVLDTHLNCTTKQASC
HHHHHHCCHHHCCCCHHHCCCCCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045804; 10984043 [H]