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The map label for this gene is yclF [H]

Identifier: 54026825

GI number: 54026825

Start: 5064275

End: 5065741

Strand: Reverse

Name: yclF [H]

Synonym: nfa48510

Alternate gene names: 54026825

Gene position: 5065741-5064275 (Counterclockwise)

Preceding gene: 54026828

Following gene: 54026824

Centisome position: 84.13

GC content: 68.1

Gene sequence:

>1467_bases
ATGTCGCACGTCGTGGAATCCGATCCACCGATCCCGGGCCGGACGCTGTTCGGCCATCCGATCGGGCTGACCAACCTGTT
CGGTGTGGAGCTGTGGGAACGGTTCTCCTTCTACGGCATGCTCACGATCCTCGGGTACTACCTCTACTACTCGGTGACCG
AGGGCGGGCTCGGGCTCGCGCAGGAGACCGGCGTCGGCATCGTCGGCGCCTACGGCGGTCTGGTCTACCTGTCCACCGTG
CTCGGCGGCTGGGTCGCCGACCGGCTGCTCGGCATGGAGCGCACCGTGTTCTACGGCGGCGTCGTGGTGGTCGCCGGGCA
TCTCGCGCTGGCCGTGCTGCCCGGACTGACCGGCGTCGGCGTCGGCTTGACGCTGGTCGCGCTGGGCAGCGGCGCCCTCA
AGGCCAACGCCTCCTCCCTGCTCGGCACCCTCTATCCCGTCGACGACGCCCGCATCGACGGCGGCTTCACCCTCTTCTAC
CTCGGTATCAACCTCGGCGCCTTCACCGGCCCGCTGCTCACCGGCGTGTTGCAGACCCACTGGGGCTTCCACTTCGGTTT
CGGCGCGGCCGCCGTCGGCATGACCCTCGGCCTGGCCCAGTACGTGATCTTCCGGCGCAACCTCGGCACCGCGGGCAAGA
CCGTGCCCAACCCGCTGCCGCGCCGCGCCTACGCCCCGATCCTGGCGGCGGTGGCGGCTGCGGCCGCGGTGGTCGCGCTC
ACCTGGGCGGTCGGCTGGGTCACCCTCGACAACCTGCCGGAGGTGACCACCGGCGTCATCGTGGTCGCCTCGGCCGCCTA
CTTCCTGGTCATGCTCACCAGCGCGAAGGTCACCCCGATCGAGCGCAGCCGGGTGCGCGCGTTCCTGCCGCTGTTCCTCG
CCAACGCGGTGTTCTGGAGCCTGTTCCAGCAGATCTTCACGGTGCTGGCCGTCTACTCCGACGAGCGGATGAACTGGAGC
ATCTTCGGCTGGACCGCGCCCAGCAACTGGATCGGCTCGGTGGAACCGGTGTGGATCATCGTGCTCTCGCCGTTGTTCGC
GCTGCTGTGGACGCGGCTGGGCAATCGAGCGCCCTCCACCCCGCGCAAGTTCGCGCTCGGCGTGATCGGCATGGGCGCCT
CGTTCCTGCTGTTCATGCCGCTGGCCGGGTTCTCCGACGGCGGAGTTCCGGCCGTGCTCGTGCTGCTGGTACTGGCCGGT
TTCGCGATCTCCGAGCTGCTGCTGTCTCCGATCGGACTGGCCGTCACCACCCAGCTGGCGCCCGAGGCGTTCCGCGCCCA
GATGATGGCGTTGTATTTCTTCTCCGTGGGTATTGGTACGTCTATGTCCGGTGTCCTCGCTCGTTTCTACGATCCGCAGC
ACGAGGCGGTCTATTTCGGCGTCACCGGTGCCGTCGCTATTGTGATCGGCCTGATCGTTGCGGCCCTCGGTCCGTGGATC
AGCCGTTACATGGCCGGCGTCCATTAG

Upstream 100 bases:

>100_bases
ACTTTCCCCGCCTGCGCGGACCGAAACCCGCGCCGGTGGGCGGCCGACGAATCCGGCGAGTTGTTCGCCACGCGGTAGCG
GAATGTGTCAAGGTCTGCTC

Downstream 100 bases:

>100_bases
CAGAAGGAGTGACCAGATGGCGATCTCGAGTCCGCGCCGCCGTAGCAGCCTGCTACGTACCAAGTCGGTCGAGCAATCGA
TCCGCGACACCGACGAACCC

Product: putative oligopeptide transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MSHVVESDPPIPGRTLFGHPIGLTNLFGVELWERFSFYGMLTILGYYLYYSVTEGGLGLAQETGVGIVGAYGGLVYLSTV
LGGWVADRLLGMERTVFYGGVVVVAGHLALAVLPGLTGVGVGLTLVALGSGALKANASSLLGTLYPVDDARIDGGFTLFY
LGINLGAFTGPLLTGVLQTHWGFHFGFGAAAVGMTLGLAQYVIFRRNLGTAGKTVPNPLPRRAYAPILAAVAAAAAVVAL
TWAVGWVTLDNLPEVTTGVIVVASAAYFLVMLTSAKVTPIERSRVRAFLPLFLANAVFWSLFQQIFTVLAVYSDERMNWS
IFGWTAPSNWIGSVEPVWIIVLSPLFALLWTRLGNRAPSTPRKFALGVIGMGASFLLFMPLAGFSDGGVPAVLVLLVLAG
FAISELLLSPIGLAVTTQLAPEAFRAQMMALYFFSVGIGTSMSGVLARFYDPQHEAVYFGVTGAVAIVIGLIVAALGPWI
SRYMAGVH

Sequences:

>Translated_488_residues
MSHVVESDPPIPGRTLFGHPIGLTNLFGVELWERFSFYGMLTILGYYLYYSVTEGGLGLAQETGVGIVGAYGGLVYLSTV
LGGWVADRLLGMERTVFYGGVVVVAGHLALAVLPGLTGVGVGLTLVALGSGALKANASSLLGTLYPVDDARIDGGFTLFY
LGINLGAFTGPLLTGVLQTHWGFHFGFGAAAVGMTLGLAQYVIFRRNLGTAGKTVPNPLPRRAYAPILAAVAAAAAVVAL
TWAVGWVTLDNLPEVTTGVIVVASAAYFLVMLTSAKVTPIERSRVRAFLPLFLANAVFWSLFQQIFTVLAVYSDERMNWS
IFGWTAPSNWIGSVEPVWIIVLSPLFALLWTRLGNRAPSTPRKFALGVIGMGASFLLFMPLAGFSDGGVPAVLVLLVLAG
FAISELLLSPIGLAVTTQLAPEAFRAQMMALYFFSVGIGTSMSGVLARFYDPQHEAVYFGVTGAVAIVIGLIVAALGPWI
SRYMAGVH
>Mature_487_residues
SHVVESDPPIPGRTLFGHPIGLTNLFGVELWERFSFYGMLTILGYYLYYSVTEGGLGLAQETGVGIVGAYGGLVYLSTVL
GGWVADRLLGMERTVFYGGVVVVAGHLALAVLPGLTGVGVGLTLVALGSGALKANASSLLGTLYPVDDARIDGGFTLFYL
GINLGAFTGPLLTGVLQTHWGFHFGFGAAAVGMTLGLAQYVIFRRNLGTAGKTVPNPLPRRAYAPILAAVAAAAAVVALT
WAVGWVTLDNLPEVTTGVIVVASAAYFLVMLTSAKVTPIERSRVRAFLPLFLANAVFWSLFQQIFTVLAVYSDERMNWSI
FGWTAPSNWIGSVEPVWIIVLSPLFALLWTRLGNRAPSTPRKFALGVIGMGASFLLFMPLAGFSDGGVPAVLVLLVLAGF
AISELLLSPIGLAVTTQLAPEAFRAQMMALYFFSVGIGTSMSGVLARFYDPQHEAVYFGVTGAVAIVIGLIVAALGPWIS
RYMAGVH

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI226371746, Length=375, Percent_Identity=26.1333333333333, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1787922, Length=471, Percent_Identity=29.5116772823779, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1789911, Length=484, Percent_Identity=28.5123966942149, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1790572, Length=411, Percent_Identity=28.4671532846715, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786927, Length=463, Percent_Identity=26.5658747300216, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71987453, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639581, Length=377, Percent_Identity=27.0557029177719, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24639583, Length=370, Percent_Identity=26.7567567567568, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24639585, Length=370, Percent_Identity=26.7567567567568, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571098, Length=384, Percent_Identity=25, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571102, Length=384, Percent_Identity=25, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571100, Length=384, Percent_Identity=25, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 51608; Mature: 51477

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCC
>Mature Secondary Structure 
SHVVESDPPIPGRTLFGHPIGLTNLFGVELWERFSFYGMLTILGYYLYYSVTEGGLGLA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QETGVGIVGAYGGLVYLSTVLGGWVADRLLGMERTVFYGGVVVVAGHLALAVLPGLTGVG
HHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHCCCCHHH
VGLTLVALGSGALKANASSLLGTLYPVDDARIDGGFTLFYLGINLGAFTGPLLTGVLQTH
HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEECCCEEEEEEECHHHHHHHHHHHHHHHHH
WGFHFGFGAAAVGMTLGLAQYVIFRRNLGTAGKTVPNPLPRRAYAPILAAVAAAAAVVAL
CCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TWAVGWVTLDNLPEVTTGVIVVASAAYFLVMLTSAKVTPIERSRVRAFLPLFLANAVFWS
HHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LFQQIFTVLAVYSDERMNWSIFGWTAPSNWIGSVEPVWIIVLSPLFALLWTRLGNRAPST
HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PRKFALGVIGMGASFLLFMPLAGFSDGGVPAVLVLLVLAGFAISELLLSPIGLAVTTQLA
CHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
PEAFRAQMMALYFFSVGIGTSMSGVLARFYDPQHEAVYFGVTGAVAIVIGLIVAALGPWI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
SRYMAGVH
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]